Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 MIR648-201ENST00000385046 94 ntBASIC16.53■□□□□ 0.24
MKS1Q9NXB0 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 LINC00265-3P-201ENST00000447588 903 ntBASIC16.53■□□□□ 0.24
MKS1Q9NXB0 AC087163.2-201ENST00000457299 853 ntBASIC16.53■□□□□ 0.24
MKS1Q9NXB0 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 AC074051.2-201ENST00000565115 352 ntBASIC16.53■□□□□ 0.24
MKS1Q9NXB0 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 AP005117.1-201ENST00000584346 1413 ntBASIC16.53■□□□□ 0.24
MKS1Q9NXB0 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MKS1Q9NXB0 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 RN7SL850P-201ENST00000579959 291 ntBASIC16.52■□□□□ 0.24
MKS1Q9NXB0 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 AL022326.1-202ENST00000641533 845 ntBASIC16.52■□□□□ 0.24
MKS1Q9NXB0 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MKS1Q9NXB0 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.52■□□□□ 0.23
MKS1Q9NXB0 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MKS1Q9NXB0 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MKS1Q9NXB0 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MKS1Q9NXB0 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 MIR5100-201ENST00000579544 119 ntBASIC16.51■□□□□ 0.23
MKS1Q9NXB0 AL589182.2-201ENST00000619332 1049 ntBASIC16.51■□□□□ 0.23
MKS1Q9NXB0 AF228730.7-201ENST00000641842 219 ntBASIC16.51■□□□□ 0.23
MKS1Q9NXB0 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms