Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
SHANK3Q9BYB0 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC21.27■■□□□ 1
SHANK3Q9BYB0 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SHANK3Q9BYB0 AC060834.1-201ENST00000443027 2032 ntBASIC21.27■■□□□ 1
SHANK3Q9BYB0 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC21.27■■□□□ 1
SHANK3Q9BYB0 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.27■□□□□ 0.99
SHANK3Q9BYB0 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
SHANK3Q9BYB0 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
SHANK3Q9BYB0 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC21.27■□□□□ 0.99
SHANK3Q9BYB0 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 BCYRN1-201ENST00000418539 200 ntBASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 BNIP3P42-201ENST00000454982 569 ntBASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 CROCCP4-201ENST00000457096 498 ntBASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 AC011495.1-201ENST00000498085 584 ntBASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 BNIP3P29-201ENST00000598302 571 ntBASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 AC020765.3-201ENST00000613051 740 ntBASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 AC011447.5-201ENST00000616168 564 ntBASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 MIR6775-201ENST00000617557 69 ntBASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 COX11-210ENST00000639671 696 ntBASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 AZGP1P1-201ENST00000411909 902 ntBASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 NEFHP1-201ENST00000412845 2629 ntBASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 NOC2LP2-201ENST00000407594 1944 ntBASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC21.26■□□□□ 0.99
SHANK3Q9BYB0 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 AMT-206ENST00000458307 1860 ntTSL 2 BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 AC026979.3-201ENST00000607315 403 ntBASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHANK3Q9BYB0 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 AP005482.1-201ENST00000563722 1273 ntBASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms