Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.12■□□□□ 0.17
VMP1Q96GC9 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
VMP1Q96GC9 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VMP1Q96GC9 AC022188.1-201ENST00000620960 1664 ntBASIC16.11■□□□□ 0.17
VMP1Q96GC9 AL135999.2-201ENST00000622438 1686 ntBASIC16.11■□□□□ 0.17
VMP1Q96GC9 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VMP1Q96GC9 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VMP1Q96GC9 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VMP1Q96GC9 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VMP1Q96GC9 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
VMP1Q96GC9 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VMP1Q96GC9 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VMP1Q96GC9 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 AL022342.1-201ENST00000400363 863 ntBASIC16.11■□□□□ 0.17
VMP1Q96GC9 AC098831.1-202ENST00000438821 336 ntBASIC16.11■□□□□ 0.17
VMP1Q96GC9 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VMP1Q96GC9 AC136632.2-201ENST00000512891 861 ntBASIC16.11■□□□□ 0.17
VMP1Q96GC9 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 AL356488.2-201ENST00000602755 427 ntBASIC16.11■□□□□ 0.17
VMP1Q96GC9 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VMP1Q96GC9 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VMP1Q96GC9 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VMP1Q96GC9 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VMP1Q96GC9 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VMP1Q96GC9 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VMP1Q96GC9 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
VMP1Q96GC9 AP002414.3-201ENST00000589352 1468 ntBASIC16.1■□□□□ 0.17
VMP1Q96GC9 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VMP1Q96GC9 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.1■□□□□ 0.17
VMP1Q96GC9 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VMP1Q96GC9 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.1■□□□□ 0.17
VMP1Q96GC9 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.1■□□□□ 0.17
VMP1Q96GC9 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VMP1Q96GC9 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.1■□□□□ 0.17
VMP1Q96GC9 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VMP1Q96GC9 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VMP1Q96GC9 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VMP1Q96GC9 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.1■□□□□ 0.17
VMP1Q96GC9 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.1■□□□□ 0.17
VMP1Q96GC9 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.1■□□□□ 0.17
VMP1Q96GC9 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.1■□□□□ 0.17
VMP1Q96GC9 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.1■□□□□ 0.17
VMP1Q96GC9 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.1■□□□□ 0.17
VMP1Q96GC9 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.1■□□□□ 0.17
VMP1Q96GC9 AC005593.1-201ENST00000624894 515 ntBASIC16.1■□□□□ 0.17
VMP1Q96GC9 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VMP1Q96GC9 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VMP1Q96GC9 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VMP1Q96GC9 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VMP1Q96GC9 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VMP1Q96GC9 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.1■□□□□ 0.17
VMP1Q96GC9 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
VMP1Q96GC9 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VMP1Q96GC9 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VMP1Q96GC9 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.09■□□□□ 0.17
VMP1Q96GC9 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
VMP1Q96GC9 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VMP1Q96GC9 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
VMP1Q96GC9 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VMP1Q96GC9 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VMP1Q96GC9 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
VMP1Q96GC9 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.09■□□□□ 0.17
VMP1Q96GC9 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VMP1Q96GC9 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
VMP1Q96GC9 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.09■□□□□ 0.17
VMP1Q96GC9 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VMP1Q96GC9 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VMP1Q96GC9 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VMP1Q96GC9 AC073621.1-201ENST00000392730 636 ntBASIC16.09■□□□□ 0.17
VMP1Q96GC9 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.09■□□□□ 0.17
VMP1Q96GC9 ELK2BP-201ENST00000415014 1224 ntBASIC16.09■□□□□ 0.17
VMP1Q96GC9 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.09■□□□□ 0.17
VMP1Q96GC9 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.09■□□□□ 0.17
VMP1Q96GC9 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.09■□□□□ 0.17
VMP1Q96GC9 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.09■□□□□ 0.17
VMP1Q96GC9 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.09■□□□□ 0.17
VMP1Q96GC9 AL353135.1-201ENST00000606729 504 ntBASIC16.09■□□□□ 0.17
VMP1Q96GC9 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.09■□□□□ 0.17
VMP1Q96GC9 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VMP1Q96GC9 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VMP1Q96GC9 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms