Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 AC134043.2-201ENST00000624206 2238 ntBASIC16.72■□□□□ 0.27
HMGB4Q8WW32 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 GK-202ENST00000378941 458 ntTSL 3 BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 MRPS18AP1-201ENST00000414458 589 ntBASIC16.72■□□□□ 0.27
HMGB4Q8WW32 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 PRYP6-201ENST00000514804 343 ntBASIC16.72■□□□□ 0.27
HMGB4Q8WW32 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 AC027307.3-201ENST00000594262 1100 ntBASIC16.72■□□□□ 0.27
HMGB4Q8WW32 AC009118.2-201ENST00000613275 655 ntBASIC16.72■□□□□ 0.27
HMGB4Q8WW32 AC007967.4-201ENST00000614700 386 ntBASIC16.72■□□□□ 0.27
HMGB4Q8WW32 AL138828.2-201ENST00000615812 383 ntBASIC16.72■□□□□ 0.27
HMGB4Q8WW32 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 AL138688.1-201ENST00000624851 1594 ntBASIC16.72■□□□□ 0.27
HMGB4Q8WW32 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGB4Q8WW32 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 AC073389.1-201ENST00000595595 795 ntBASIC16.71■□□□□ 0.27
HMGB4Q8WW32 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 AC004233.3-201ENST00000607794 1269 ntBASIC16.71■□□□□ 0.27
HMGB4Q8WW32 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 AC022144.1-201ENST00000602255 1580 ntBASIC16.71■□□□□ 0.27
HMGB4Q8WW32 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HMGB4Q8WW32 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.71■□□□□ 0.26
HMGB4Q8WW32 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.26
HMGB4Q8WW32 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 AC106820.2-201ENST00000563775 3264 ntBASIC16.7■□□□□ 0.26
HMGB4Q8WW32 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 PIN1P1-201ENST00000412108 996 ntBASIC16.7■□□□□ 0.26
HMGB4Q8WW32 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 TSSK5P-201ENST00000423978 907 ntBASIC16.7■□□□□ 0.26
HMGB4Q8WW32 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.7■□□□□ 0.26
HMGB4Q8WW32 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms