Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 SPDYE7P-202ENST00000420373 878 ntBASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 GAPDHP21-201ENST00000450301 1010 ntBASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 SLC25A39P2-201ENST00000537614 270 ntBASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 AC140878.1-201ENST00000565277 250 ntBASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 OR6D1P-203ENST00000641209 4860 ntBASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 AC141586.5-201ENST00000624546 2050 ntBASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 AC026150.2-201ENST00000564693 1156 ntBASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 LINC02560-201ENST00000596379 459 ntBASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 AL390754.1-201ENST00000619088 582 ntBASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 AC008761.3-201ENST00000624803 892 ntBASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 AL358472.5-202ENST00000641448 1267 ntBASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 AC092068.3-201ENST00000587894 2016 ntBASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
HDDC3Q8N4P3 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms