Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 HCG4B-203ENST00000450128 991 ntBASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 AC145285.3-201ENST00000564603 959 ntBASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 MIR4515-201ENST00000584082 81 ntBASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC65Q8IXS2 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 IGLL3P-201ENST00000412472 434 ntBASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 AL513480.1-201ENST00000451731 511 ntBASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 ACE-204ENST00000428043 5120 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 AC104109.2-201ENST00000602919 1418 ntBASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC65Q8IXS2 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 IL9RP2-201ENST00000423948 1312 ntBASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC65Q8IXS2 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 AL590627.1-203ENST00000421194 1026 ntBASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 RPL13AP23-201ENST00000480739 586 ntBASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 AL645728.2-201ENST00000641974 660 ntBASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC65Q8IXS2 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms