Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
USP54Q70EL1 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
USP54Q70EL1 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC21.91■■□□□ 1.1
USP54Q70EL1 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
USP54Q70EL1 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
USP54Q70EL1 AC007541.1-201ENST00000570282 1469 ntBASIC21.9■■□□□ 1.1
USP54Q70EL1 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC21.9■■□□□ 1.1
USP54Q70EL1 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.9■■□□□ 1.1
USP54Q70EL1 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
USP54Q70EL1 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
USP54Q70EL1 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC21.9■■□□□ 1.1
USP54Q70EL1 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
USP54Q70EL1 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
USP54Q70EL1 AZGP1P1-201ENST00000411909 902 ntBASIC21.9■■□□□ 1.1
USP54Q70EL1 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
USP54Q70EL1 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC21.9■■□□□ 1.1
USP54Q70EL1 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC21.9■■□□□ 1.1
USP54Q70EL1 AL158212.4-201ENST00000624062 1286 ntBASIC21.9■■□□□ 1.1
USP54Q70EL1 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC21.9■■□□□ 1.1
USP54Q70EL1 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
USP54Q70EL1 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
USP54Q70EL1 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
USP54Q70EL1 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
USP54Q70EL1 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
USP54Q70EL1 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
USP54Q70EL1 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
USP54Q70EL1 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC21.9■■□□□ 1.1
USP54Q70EL1 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC21.9■■□□□ 1.1
USP54Q70EL1 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC21.89■■□□□ 1.1
USP54Q70EL1 AC139713.2-201ENST00000641328 2723 ntBASIC21.89■■□□□ 1.1
USP54Q70EL1 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC21.89■■□□□ 1.1
USP54Q70EL1 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
USP54Q70EL1 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
USP54Q70EL1 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.1
USP54Q70EL1 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
USP54Q70EL1 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
USP54Q70EL1 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC21.89■■□□□ 1.1
USP54Q70EL1 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC21.89■■□□□ 1.1
USP54Q70EL1 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
USP54Q70EL1 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
USP54Q70EL1 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
USP54Q70EL1 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
USP54Q70EL1 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
USP54Q70EL1 AC078925.2-201ENST00000624013 1973 ntBASIC21.89■■□□□ 1.09
USP54Q70EL1 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
USP54Q70EL1 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
USP54Q70EL1 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
USP54Q70EL1 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
USP54Q70EL1 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC21.88■■□□□ 1.09
USP54Q70EL1 HLA-V-201ENST00000429037 534 ntBASIC21.88■■□□□ 1.09
USP54Q70EL1 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC21.88■■□□□ 1.09
USP54Q70EL1 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
USP54Q70EL1 AC008735.3-201ENST00000596646 500 ntBASIC21.88■■□□□ 1.09
USP54Q70EL1 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
USP54Q70EL1 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
USP54Q70EL1 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC21.88■■□□□ 1.09
USP54Q70EL1 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC21.88■■□□□ 1.09
USP54Q70EL1 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
USP54Q70EL1 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
USP54Q70EL1 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
USP54Q70EL1 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
USP54Q70EL1 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC21.88■■□□□ 1.09
USP54Q70EL1 TTTY23B-201ENST00000442790 549 ntBASIC21.88■■□□□ 1.09
USP54Q70EL1 SNX29P1-201ENST00000548357 1007 ntBASIC21.88■■□□□ 1.09
USP54Q70EL1 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC21.88■■□□□ 1.09
USP54Q70EL1 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
USP54Q70EL1 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
USP54Q70EL1 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC21.88■■□□□ 1.09
USP54Q70EL1 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
USP54Q70EL1 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
USP54Q70EL1 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
USP54Q70EL1 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC21.87■■□□□ 1.09
USP54Q70EL1 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC21.87■■□□□ 1.09
USP54Q70EL1 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
USP54Q70EL1 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
USP54Q70EL1 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC21.87■■□□□ 1.09
USP54Q70EL1 GLI4-203ENST00000517468 963 ntTSL 5 BASIC21.87■■□□□ 1.09
USP54Q70EL1 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC21.87■■□□□ 1.09
USP54Q70EL1 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
USP54Q70EL1 AC093726.1-201ENST00000608064 963 ntBASIC21.87■■□□□ 1.09
USP54Q70EL1 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
USP54Q70EL1 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
USP54Q70EL1 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.87■■□□□ 1.09
USP54Q70EL1 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
USP54Q70EL1 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
USP54Q70EL1 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
USP54Q70EL1 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
USP54Q70EL1 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
USP54Q70EL1 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC21.87■■□□□ 1.09
USP54Q70EL1 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC21.87■■□□□ 1.09
USP54Q70EL1 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
USP54Q70EL1 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC21.86■■□□□ 1.09
USP54Q70EL1 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC21.86■■□□□ 1.09
USP54Q70EL1 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
USP54Q70EL1 AC087499.6-201ENST00000411576 835 ntBASIC21.86■■□□□ 1.09
USP54Q70EL1 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
USP54Q70EL1 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC21.86■■□□□ 1.09
USP54Q70EL1 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
USP54Q70EL1 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC21.86■■□□□ 1.09
USP54Q70EL1 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms