Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.05■□□□□ 0.48
KRT39Q6A163 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.05■□□□□ 0.48
KRT39Q6A163 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.05■□□□□ 0.48
KRT39Q6A163 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
KRT39Q6A163 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.05■□□□□ 0.48
KRT39Q6A163 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.05■□□□□ 0.48
KRT39Q6A163 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
KRT39Q6A163 AL591424.1-201ENST00000442569 1213 ntBASIC18.05■□□□□ 0.48
KRT39Q6A163 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.05■□□□□ 0.48
KRT39Q6A163 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.05■□□□□ 0.48
KRT39Q6A163 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.05■□□□□ 0.48
KRT39Q6A163 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
KRT39Q6A163 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
KRT39Q6A163 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.05■□□□□ 0.48
KRT39Q6A163 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 GGT4P-201ENST00000623672 1708 ntBASIC18.05■□□□□ 0.48
KRT39Q6A163 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
KRT39Q6A163 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
KRT39Q6A163 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
KRT39Q6A163 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 GGT3P-204ENST00000453783 1664 ntBASIC18.05■□□□□ 0.48
KRT39Q6A163 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.05■□□□□ 0.48
KRT39Q6A163 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.05■□□□□ 0.48
KRT39Q6A163 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.05■□□□□ 0.48
KRT39Q6A163 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.05■□□□□ 0.48
KRT39Q6A163 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
KRT39Q6A163 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.04■□□□□ 0.48
KRT39Q6A163 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.04■□□□□ 0.48
KRT39Q6A163 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.04■□□□□ 0.48
KRT39Q6A163 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.04■□□□□ 0.48
KRT39Q6A163 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 RNU1-129P-201ENST00000384064 167 ntBASIC18.04■□□□□ 0.48
KRT39Q6A163 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.04■□□□□ 0.48
KRT39Q6A163 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.04■□□□□ 0.48
KRT39Q6A163 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.04■□□□□ 0.48
KRT39Q6A163 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.04■□□□□ 0.48
KRT39Q6A163 AC018845.2-201ENST00000568326 409 ntBASIC18.04■□□□□ 0.48
KRT39Q6A163 U1.21-201ENST00000580816 167 ntBASIC18.04■□□□□ 0.48
KRT39Q6A163 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.04■□□□□ 0.48
KRT39Q6A163 AC027601.4-201ENST00000611259 610 ntBASIC18.04■□□□□ 0.48
KRT39Q6A163 AC004877.2-201ENST00000623941 599 ntBASIC18.04■□□□□ 0.48
KRT39Q6A163 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
KRT39Q6A163 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC18.04■□□□□ 0.48
KRT39Q6A163 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
KRT39Q6A163 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
KRT39Q6A163 ALOX12P2-203ENST00000570921 1945 ntBASIC18.04■□□□□ 0.48
KRT39Q6A163 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
KRT39Q6A163 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
KRT39Q6A163 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.03■□□□□ 0.48
KRT39Q6A163 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
KRT39Q6A163 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
KRT39Q6A163 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
KRT39Q6A163 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
KRT39Q6A163 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
KRT39Q6A163 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
KRT39Q6A163 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.03■□□□□ 0.48
KRT39Q6A163 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
KRT39Q6A163 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
KRT39Q6A163 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
KRT39Q6A163 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
KRT39Q6A163 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.03■□□□□ 0.48
KRT39Q6A163 MIR3909-201ENST00000579518 119 ntBASIC18.03■□□□□ 0.48
KRT39Q6A163 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
KRT39Q6A163 AC140113.2-201ENST00000604370 208 ntBASIC18.03■□□□□ 0.48
KRT39Q6A163 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
KRT39Q6A163 FAM197Y3-203ENST00000618346 717 ntBASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms