Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 VN2R19P-201ENST00000442399 1052 ntBASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 AC018845.2-201ENST00000568326 409 ntBASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 AC002347.1-201ENST00000569543 541 ntBASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 MPDU1-223ENST00000582151 728 ntBASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
PTCHD3Q3KNS1 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 UPF3AP3-201ENST00000420996 769 ntBASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms