Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.37■□□□□ 0.69
SF3A1Q15459 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.37■□□□□ 0.69
SF3A1Q15459 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.37■□□□□ 0.69
SF3A1Q15459 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
SF3A1Q15459 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 KRT8P49-201ENST00000604166 1432 ntBASIC19.37■□□□□ 0.69
SF3A1Q15459 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC19.37■□□□□ 0.69
SF3A1Q15459 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.37■□□□□ 0.69
SF3A1Q15459 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SF3A1Q15459 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.37■□□□□ 0.69
SF3A1Q15459 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.37■□□□□ 0.69
SF3A1Q15459 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.37■□□□□ 0.69
SF3A1Q15459 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.37■□□□□ 0.69
SF3A1Q15459 AC139887.3-201ENST00000568585 713 ntBASIC19.37■□□□□ 0.69
SF3A1Q15459 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.37■□□□□ 0.69
SF3A1Q15459 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 SDCCAG3P1-201ENST00000589292 1150 ntBASIC19.37■□□□□ 0.69
SF3A1Q15459 CLEC4GP1-201ENST00000596555 870 ntBASIC19.37■□□□□ 0.69
SF3A1Q15459 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.37■□□□□ 0.69
SF3A1Q15459 AC004706.3-202ENST00000621574 984 ntBASIC19.37■□□□□ 0.69
SF3A1Q15459 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
SF3A1Q15459 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.37■□□□□ 0.69
SF3A1Q15459 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
SF3A1Q15459 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SF3A1Q15459 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 LINC00895-201ENST00000629028 1637 ntBASIC19.36■□□□□ 0.69
SF3A1Q15459 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
SF3A1Q15459 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19.36■□□□□ 0.69
SF3A1Q15459 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
SF3A1Q15459 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SF3A1Q15459 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.36■□□□□ 0.69
SF3A1Q15459 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SF3A1Q15459 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
SF3A1Q15459 AC092364.2-201ENST00000596710 2692 ntBASIC19.36■□□□□ 0.69
SF3A1Q15459 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
SF3A1Q15459 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC19.36■□□□□ 0.69
SF3A1Q15459 AC011270.2-201ENST00000624293 2550 ntBASIC19.36■□□□□ 0.69
SF3A1Q15459 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.36■□□□□ 0.69
SF3A1Q15459 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.36■□□□□ 0.69
SF3A1Q15459 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
SF3A1Q15459 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SF3A1Q15459 SAPCD2P3-201ENST00000455031 850 ntBASIC19.36■□□□□ 0.69
SF3A1Q15459 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.36■□□□□ 0.69
SF3A1Q15459 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.36■□□□□ 0.69
SF3A1Q15459 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC19.36■□□□□ 0.69
SF3A1Q15459 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.36■□□□□ 0.69
SF3A1Q15459 AC025062.2-201ENST00000605477 670 ntBASIC19.36■□□□□ 0.69
SF3A1Q15459 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
SF3A1Q15459 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SF3A1Q15459 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.36■□□□□ 0.69
SF3A1Q15459 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SF3A1Q15459 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms