Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 CTNS-203ENST00000399306 803 ntTSL 3 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 THAP5-204ENST00000438865 868 ntTSL 2 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 AC069148.1-201ENST00000608741 768 ntBASIC12.89□□□□□ -0.35
HIST1H1AQ02539 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 CA12-203ENST00000422263 2556 ntTSL 2 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 AC092068.3-201ENST00000587894 2016 ntBASIC12.89□□□□□ -0.35
HIST1H1AQ02539 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
HIST1H1AQ02539 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 FUOM-202ENST00000368551 628 ntTSL 3 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 ISCU-203ENST00000431221 799 ntTSL 2 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 AP002383.4-201ENST00000442518 975 ntBASIC12.88□□□□□ -0.35
HIST1H1AQ02539 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 COX5A-202ENST00000562233 441 ntTSL 3 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 COX5A-204ENST00000567270 579 ntTSL 3 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC12.88□□□□□ -0.35
HIST1H1AQ02539 BNIP3P18-201ENST00000593976 575 ntBASIC12.88□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms