Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
PRKDCP78527 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC11.85□□□□□ -0.51
PRKDCP78527 AP006547.1-201ENST00000563435 692 ntBASIC11.85□□□□□ -0.51
PRKDCP78527 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC11.85□□□□□ -0.51
PRKDCP78527 MPDU1-223ENST00000582151 728 ntBASIC11.85□□□□□ -0.51
PRKDCP78527 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC11.85□□□□□ -0.51
PRKDCP78527 INO80C-210ENST00000590757 595 ntTSL 2 BASIC11.85□□□□□ -0.51
PRKDCP78527 AC005702.4-201ENST00000618393 416 ntBASIC11.85□□□□□ -0.51
PRKDCP78527 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC11.85□□□□□ -0.51
PRKDCP78527 HLA-C-210ENST00000640219 976 ntBASIC11.85□□□□□ -0.51
PRKDCP78527 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC11.85□□□□□ -0.51
PRKDCP78527 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC11.85□□□□□ -0.51
PRKDCP78527 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC11.85□□□□□ -0.51
PRKDCP78527 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC11.85□□□□□ -0.51
PRKDCP78527 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC11.84□□□□□ -0.51
PRKDCP78527 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC11.84□□□□□ -0.51
PRKDCP78527 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
PRKDCP78527 SDCCAG3P2-201ENST00000326105 1023 ntBASIC11.84□□□□□ -0.51
PRKDCP78527 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC11.84□□□□□ -0.51
PRKDCP78527 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
PRKDCP78527 FTLP10-202ENST00000505798 471 ntBASIC11.84□□□□□ -0.51
PRKDCP78527 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC11.84□□□□□ -0.51
PRKDCP78527 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC11.84□□□□□ -0.51
PRKDCP78527 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC11.84□□□□□ -0.51
PRKDCP78527 KLK3-211ENST00000597483 810 ntTSL 2 BASIC11.84□□□□□ -0.51
PRKDCP78527 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
PRKDCP78527 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
PRKDCP78527 AC006480.2-201ENST00000609770 1337 ntBASIC11.84□□□□□ -0.51
PRKDCP78527 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
PRKDCP78527 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PRKDCP78527 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC11.84□□□□□ -0.51
PRKDCP78527 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PRKDCP78527 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
PRKDCP78527 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
PRKDCP78527 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PRKDCP78527 AL136301.1-201ENST00000615830 422 ntBASIC11.84□□□□□ -0.51
PRKDCP78527 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC11.84□□□□□ -0.51
PRKDCP78527 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
PRKDCP78527 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC11.84□□□□□ -0.51
PRKDCP78527 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PRKDCP78527 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
PRKDCP78527 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PRKDCP78527 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC11.84□□□□□ -0.51
PRKDCP78527 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC11.84□□□□□ -0.51
PRKDCP78527 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC11.84□□□□□ -0.51
PRKDCP78527 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC11.84□□□□□ -0.51
PRKDCP78527 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PRKDCP78527 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
PRKDCP78527 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC11.84□□□□□ -0.51
PRKDCP78527 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC11.84□□□□□ -0.51
PRKDCP78527 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
PRKDCP78527 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
PRKDCP78527 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PRKDCP78527 HLA-DQB2-229ENST00000411527 1059 ntBASIC11.84□□□□□ -0.51
PRKDCP78527 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC11.84□□□□□ -0.51
PRKDCP78527 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC11.84□□□□□ -0.51
PRKDCP78527 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
PRKDCP78527 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC11.84□□□□□ -0.51
PRKDCP78527 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC11.84□□□□□ -0.51
PRKDCP78527 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC11.84□□□□□ -0.51
PRKDCP78527 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC11.84□□□□□ -0.51
PRKDCP78527 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
PRKDCP78527 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
PRKDCP78527 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC11.83□□□□□ -0.51
PRKDCP78527 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
PRKDCP78527 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC11.83□□□□□ -0.52
PRKDCP78527 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC11.83□□□□□ -0.52
PRKDCP78527 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
PRKDCP78527 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
PRKDCP78527 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
PRKDCP78527 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC11.83□□□□□ -0.52
PRKDCP78527 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 TOP3BP1-201ENST00000420768 1380 ntBASIC11.83□□□□□ -0.52
PRKDCP78527 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
PRKDCP78527 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC11.83□□□□□ -0.52
PRKDCP78527 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC11.83□□□□□ -0.52
PRKDCP78527 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC11.83□□□□□ -0.52
PRKDCP78527 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC11.83□□□□□ -0.52
PRKDCP78527 ARTN-209ENST00000479128 471 ntTSL 3 BASIC11.83□□□□□ -0.52
PRKDCP78527 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC11.83□□□□□ -0.52
PRKDCP78527 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC11.83□□□□□ -0.52
PRKDCP78527 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
PRKDCP78527 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms