Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.5■□□□□ 0.39
HDAC4P56524 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC4P56524 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC4P56524 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
HDAC4P56524 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC4P56524 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC4P56524 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
HDAC4P56524 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.5■□□□□ 0.39
HDAC4P56524 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC4P56524 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC4P56524 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC4P56524 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.5■□□□□ 0.39
HDAC4P56524 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC4P56524 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC4P56524 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.5■□□□□ 0.39
HDAC4P56524 HLA-J-202ENST00000469281 1241 ntBASIC17.5■□□□□ 0.39
HDAC4P56524 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.5■□□□□ 0.39
HDAC4P56524 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.5■□□□□ 0.39
HDAC4P56524 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.5■□□□□ 0.39
HDAC4P56524 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
HDAC4P56524 AC120114.3-201ENST00000611923 658 ntBASIC17.5■□□□□ 0.39
HDAC4P56524 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.5■□□□□ 0.39
HDAC4P56524 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC4P56524 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.5■□□□□ 0.39
HDAC4P56524 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.5■□□□□ 0.39
HDAC4P56524 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC4P56524 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC4P56524 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.5■□□□□ 0.39
HDAC4P56524 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC4P56524 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC4P56524 AC018695.7-201ENST00000624587 2492 ntBASIC17.49■□□□□ 0.39
HDAC4P56524 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.49■□□□□ 0.39
HDAC4P56524 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC4P56524 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.49■□□□□ 0.39
HDAC4P56524 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.49■□□□□ 0.39
HDAC4P56524 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.49■□□□□ 0.39
HDAC4P56524 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC4P56524 AC046158.3-201ENST00000624947 2558 ntBASIC17.49■□□□□ 0.39
HDAC4P56524 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
HDAC4P56524 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HDAC4P56524 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC4P56524 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.49■□□□□ 0.39
HDAC4P56524 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC4P56524 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC4P56524 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
HDAC4P56524 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.49■□□□□ 0.39
HDAC4P56524 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
HDAC4P56524 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HDAC4P56524 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HDAC4P56524 HCG4-201ENST00000418983 998 ntBASIC17.49■□□□□ 0.39
HDAC4P56524 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.49■□□□□ 0.39
HDAC4P56524 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC4P56524 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.49■□□□□ 0.39
HDAC4P56524 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.49■□□□□ 0.39
HDAC4P56524 AC087641.1-201ENST00000557561 1021 ntBASIC17.49■□□□□ 0.39
HDAC4P56524 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.49■□□□□ 0.39
HDAC4P56524 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.49■□□□□ 0.39
HDAC4P56524 AC010507.1-201ENST00000633895 436 ntBASIC17.49■□□□□ 0.39
HDAC4P56524 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.49■□□□□ 0.39
HDAC4P56524 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC4P56524 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC4P56524 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HDAC4P56524 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HDAC4P56524 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC4P56524 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC4P56524 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.49■□□□□ 0.39
HDAC4P56524 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC4P56524 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.49■□□□□ 0.39
HDAC4P56524 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC4P56524 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC4P56524 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HDAC4P56524 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HDAC4P56524 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.48■□□□□ 0.39
HDAC4P56524 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HDAC4P56524 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.48■□□□□ 0.39
HDAC4P56524 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.48■□□□□ 0.39
HDAC4P56524 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.48■□□□□ 0.39
HDAC4P56524 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.48■□□□□ 0.39
HDAC4P56524 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HDAC4P56524 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.48■□□□□ 0.39
HDAC4P56524 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDAC4P56524 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDAC4P56524 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms