Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.64■□□□□ 0.41
COL4A4P53420 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.64■□□□□ 0.41
COL4A4P53420 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A4P53420 RPF1-202ENST00000370656 724 ntTSL 2 BASIC17.64■□□□□ 0.41
COL4A4P53420 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.64■□□□□ 0.41
COL4A4P53420 BCYRN1-201ENST00000418539 200 ntBASIC17.64■□□□□ 0.41
COL4A4P53420 USP32P1-208ENST00000506594 1164 ntBASIC17.64■□□□□ 0.41
COL4A4P53420 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.64■□□□□ 0.41
COL4A4P53420 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.64■□□□□ 0.41
COL4A4P53420 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A4P53420 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A4P53420 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A4P53420 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A4P53420 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
COL4A4P53420 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.63■□□□□ 0.41
COL4A4P53420 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.63■□□□□ 0.41
COL4A4P53420 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.63■□□□□ 0.41
COL4A4P53420 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A4P53420 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A4P53420 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A4P53420 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A4P53420 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A4P53420 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.63■□□□□ 0.41
COL4A4P53420 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A4P53420 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A4P53420 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.63■□□□□ 0.41
COL4A4P53420 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A4P53420 AC022210.1-201ENST00000449856 793 ntBASIC17.63■□□□□ 0.41
COL4A4P53420 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
COL4A4P53420 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC17.63■□□□□ 0.41
COL4A4P53420 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A4P53420 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.63■□□□□ 0.41
COL4A4P53420 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A4P53420 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC17.63■□□□□ 0.41
COL4A4P53420 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.63■□□□□ 0.41
COL4A4P53420 AC021097.1-201ENST00000607902 574 ntBASIC17.63■□□□□ 0.41
COL4A4P53420 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A4P53420 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC17.63■□□□□ 0.41
COL4A4P53420 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A4P53420 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A4P53420 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
COL4A4P53420 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
COL4A4P53420 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.62■□□□□ 0.41
COL4A4P53420 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.62■□□□□ 0.41
COL4A4P53420 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
COL4A4P53420 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A4P53420 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A4P53420 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
COL4A4P53420 PACS1-203ENST00000524815 628 ntTSL 4 BASIC17.62■□□□□ 0.41
COL4A4P53420 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC17.62■□□□□ 0.41
COL4A4P53420 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.62■□□□□ 0.41
COL4A4P53420 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A4P53420 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.62■□□□□ 0.41
COL4A4P53420 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.62■□□□□ 0.41
COL4A4P53420 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
COL4A4P53420 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A4P53420 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
COL4A4P53420 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A4P53420 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A4P53420 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.62■□□□□ 0.41
COL4A4P53420 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A4P53420 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.62■□□□□ 0.41
COL4A4P53420 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A4P53420 AC078925.2-201ENST00000624013 1973 ntBASIC17.62■□□□□ 0.41
COL4A4P53420 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A4P53420 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A4P53420 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
COL4A4P53420 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.61■□□□□ 0.41
COL4A4P53420 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A4P53420 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A4P53420 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A4P53420 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
COL4A4P53420 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.61■□□□□ 0.41
COL4A4P53420 BNIP3P42-201ENST00000454982 569 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.61■□□□□ 0.41
COL4A4P53420 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A4P53420 AC011495.1-201ENST00000498085 584 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC17.61■□□□□ 0.41
COL4A4P53420 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC17.61■□□□□ 0.41
COL4A4P53420 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
COL4A4P53420 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC17.61■□□□□ 0.41
COL4A4P53420 AP005482.1-201ENST00000563722 1273 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 BNIP3P29-201ENST00000598302 571 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 AC011447.5-201ENST00000616168 564 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 COX11-210ENST00000639671 696 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 AL109936.8-201ENST00000641772 604 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.61■□□□□ 0.41
COL4A4P53420 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 AC073439.1-201ENST00000624121 1774 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.61■□□□□ 0.41
COL4A4P53420 AL021920.2-201ENST00000624828 1351 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A4P53420 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A4P53420 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.61■□□□□ 0.41
COL4A4P53420 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A4P53420 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A4P53420 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A4P53420 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.61■□□□□ 0.41
COL4A4P53420 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A4P53420 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms