Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
LIG3P49916 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 FDX1P1-201ENST00000449115 551 ntBASIC17.69■□□□□ 0.42
LIG3P49916 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.69■□□□□ 0.42
LIG3P49916 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.69■□□□□ 0.42
LIG3P49916 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.69■□□□□ 0.42
LIG3P49916 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.69■□□□□ 0.42
LIG3P49916 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
LIG3P49916 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.69■□□□□ 0.42
LIG3P49916 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.69■□□□□ 0.42
LIG3P49916 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.69■□□□□ 0.42
LIG3P49916 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
LIG3P49916 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.69■□□□□ 0.42
LIG3P49916 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.68■□□□□ 0.42
LIG3P49916 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.68■□□□□ 0.42
LIG3P49916 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.68■□□□□ 0.42
LIG3P49916 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.68■□□□□ 0.42
LIG3P49916 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.68■□□□□ 0.42
LIG3P49916 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
LIG3P49916 FGFR3P6-201ENST00000457012 610 ntBASIC17.68■□□□□ 0.42
LIG3P49916 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.68■□□□□ 0.42
LIG3P49916 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.68■□□□□ 0.42
LIG3P49916 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.68■□□□□ 0.42
LIG3P49916 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.68■□□□□ 0.42
LIG3P49916 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.68■□□□□ 0.42
LIG3P49916 NID2-208ENST00000617139 3827 ntTSL 5 BASIC17.68■□□□□ 0.42
LIG3P49916 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
LIG3P49916 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.68■□□□□ 0.42
LIG3P49916 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 AC092384.3-202ENST00000564646 2873 ntBASIC17.68■□□□□ 0.42
LIG3P49916 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIG3P49916 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.68■□□□□ 0.42
LIG3P49916 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.67■□□□□ 0.42
LIG3P49916 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
LIG3P49916 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.67■□□□□ 0.42
LIG3P49916 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIG3P49916 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIG3P49916 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
LIG3P49916 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIG3P49916 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIG3P49916 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIG3P49916 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.67■□□□□ 0.42
LIG3P49916 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
LIG3P49916 DDX43P3-201ENST00000441064 443 ntBASIC17.67■□□□□ 0.42
LIG3P49916 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.67■□□□□ 0.42
LIG3P49916 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIG3P49916 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIG3P49916 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.67■□□□□ 0.42
LIG3P49916 TP73-AS1-207ENST00000624167 988 ntBASIC17.67■□□□□ 0.42
LIG3P49916 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
LIG3P49916 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIG3P49916 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
LIG3P49916 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
LIG3P49916 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIG3P49916 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIG3P49916 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIG3P49916 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LIG3P49916 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIG3P49916 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIG3P49916 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.67■□□□□ 0.42
LIG3P49916 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.66■□□□□ 0.42
LIG3P49916 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
LIG3P49916 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIG3P49916 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIG3P49916 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.66■□□□□ 0.42
LIG3P49916 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms