Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 FDX1P1-201ENST00000449115 551 ntBASIC16.29■□□□□ 0.2
HNF4AP41235 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.29■□□□□ 0.2
HNF4AP41235 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.29■□□□□ 0.2
HNF4AP41235 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
HNF4AP41235 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.29■□□□□ 0.2
HNF4AP41235 AC117500.6-201ENST00000624871 588 ntBASIC16.29■□□□□ 0.2
HNF4AP41235 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
HNF4AP41235 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
HNF4AP41235 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HNF4AP41235 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
HNF4AP41235 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.29■□□□□ 0.2
HNF4AP41235 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HNF4AP41235 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.28■□□□□ 0.2
HNF4AP41235 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
HNF4AP41235 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
HNF4AP41235 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
HNF4AP41235 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HNF4AP41235 AC098831.1-202ENST00000438821 336 ntBASIC16.28■□□□□ 0.2
HNF4AP41235 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.28■□□□□ 0.2
HNF4AP41235 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.28■□□□□ 0.2
HNF4AP41235 REXO1L3P-201ENST00000622202 1288 ntBASIC16.28■□□□□ 0.2
HNF4AP41235 PGM5P2-202ENST00000637225 1043 ntBASIC16.28■□□□□ 0.2
HNF4AP41235 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.28■□□□□ 0.2
HNF4AP41235 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.28■□□□□ 0.2
HNF4AP41235 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
HNF4AP41235 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
HNF4AP41235 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.28■□□□□ 0.2
HNF4AP41235 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HNF4AP41235 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
HNF4AP41235 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HNF4AP41235 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HNF4AP41235 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
HNF4AP41235 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HNF4AP41235 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HNF4AP41235 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
HNF4AP41235 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HNF4AP41235 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HNF4AP41235 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.27■□□□□ 0.2
HNF4AP41235 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HNF4AP41235 AC006538.1-201ENST00000567905 1585 ntBASIC16.27■□□□□ 0.2
HNF4AP41235 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
HNF4AP41235 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HNF4AP41235 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HNF4AP41235 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HNF4AP41235 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HNF4AP41235 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
HNF4AP41235 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HNF4AP41235 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
HNF4AP41235 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HNF4AP41235 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.27■□□□□ 0.2
HNF4AP41235 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.27■□□□□ 0.2
HNF4AP41235 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
HNF4AP41235 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.27■□□□□ 0.2
HNF4AP41235 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.27■□□□□ 0.2
HNF4AP41235 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.27■□□□□ 0.2
HNF4AP41235 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.27■□□□□ 0.2
HNF4AP41235 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.27■□□□□ 0.2
HNF4AP41235 AC091167.2-201ENST00000579581 588 ntBASIC16.27■□□□□ 0.2
HNF4AP41235 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
HNF4AP41235 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.27■□□□□ 0.19
HNF4AP41235 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
HNF4AP41235 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HNF4AP41235 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.27■□□□□ 0.19
HNF4AP41235 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.19
HNF4AP41235 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HNF4AP41235 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HNF4AP41235 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.27■□□□□ 0.19
HNF4AP41235 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HNF4AP41235 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HNF4AP41235 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.26■□□□□ 0.19
HNF4AP41235 CICP6-201ENST00000457191 2729 ntBASIC16.26■□□□□ 0.19
HNF4AP41235 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.26■□□□□ 0.19
HNF4AP41235 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HNF4AP41235 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.26■□□□□ 0.19
HNF4AP41235 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HNF4AP41235 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
HNF4AP41235 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HNF4AP41235 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HNF4AP41235 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HNF4AP41235 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.26■□□□□ 0.19
HNF4AP41235 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.26■□□□□ 0.19
HNF4AP41235 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.26■□□□□ 0.19
HNF4AP41235 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms