Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC20.71■□□□□ 0.91
COL5A3P25940 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC20.71■□□□□ 0.91
COL5A3P25940 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.71■□□□□ 0.91
COL5A3P25940 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.91
COL5A3P25940 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
COL5A3P25940 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL5A3P25940 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL5A3P25940 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL5A3P25940 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
COL5A3P25940 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC20.7■□□□□ 0.9
COL5A3P25940 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC20.7■□□□□ 0.9
COL5A3P25940 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
COL5A3P25940 AL139010.1-201ENST00000454878 894 ntBASIC20.7■□□□□ 0.9
COL5A3P25940 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC20.7■□□□□ 0.9
COL5A3P25940 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC20.7■□□□□ 0.9
COL5A3P25940 PAM16-204ENST00000571941 674 ntTSL 3 BASIC20.7■□□□□ 0.9
COL5A3P25940 MIR5189-201ENST00000577370 114 ntBASIC20.7■□□□□ 0.9
COL5A3P25940 MIR4321-201ENST00000592276 80 ntBASIC20.7■□□□□ 0.9
COL5A3P25940 MIR6799-201ENST00000620297 69 ntBASIC20.7■□□□□ 0.9
COL5A3P25940 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC20.7■□□□□ 0.9
COL5A3P25940 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL5A3P25940 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
COL5A3P25940 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL5A3P25940 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
COL5A3P25940 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL5A3P25940 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL5A3P25940 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL5A3P25940 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL5A3P25940 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL5A3P25940 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
COL5A3P25940 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL5A3P25940 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL5A3P25940 MFF-223ENST00000524634 647 ntTSL 2 BASIC20.7■□□□□ 0.9
COL5A3P25940 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL5A3P25940 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC20.7■□□□□ 0.9
COL5A3P25940 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC20.7■□□□□ 0.9
COL5A3P25940 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.7■□□□□ 0.9
COL5A3P25940 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL5A3P25940 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL5A3P25940 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL5A3P25940 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL5A3P25940 Z97205.2-201ENST00000564697 1639 ntBASIC20.69■□□□□ 0.9
COL5A3P25940 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL5A3P25940 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL5A3P25940 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL5A3P25940 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL5A3P25940 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC20.69■□□□□ 0.9
COL5A3P25940 REXO1L6P-201ENST00000603433 1515 ntBASIC20.69■□□□□ 0.9
COL5A3P25940 AL645728.1-201ENST00000366221 2101 ntBASIC20.69■□□□□ 0.9
COL5A3P25940 RPF1-202ENST00000370656 724 ntTSL 2 BASIC20.69■□□□□ 0.9
COL5A3P25940 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
COL5A3P25940 AZGP1P1-201ENST00000411909 902 ntBASIC20.69■□□□□ 0.9
COL5A3P25940 MEP1AP4-201ENST00000423244 1087 ntBASIC20.69■□□□□ 0.9
COL5A3P25940 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
COL5A3P25940 AC092552.1-201ENST00000547243 906 ntBASIC20.69■□□□□ 0.9
COL5A3P25940 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC20.69■□□□□ 0.9
COL5A3P25940 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC20.69■□□□□ 0.9
COL5A3P25940 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC20.69■□□□□ 0.9
COL5A3P25940 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
COL5A3P25940 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
COL5A3P25940 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL5A3P25940 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL5A3P25940 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.68■□□□□ 0.9
COL5A3P25940 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
COL5A3P25940 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL5A3P25940 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC20.68■□□□□ 0.9
COL5A3P25940 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
COL5A3P25940 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
COL5A3P25940 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
COL5A3P25940 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL5A3P25940 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC20.68■□□□□ 0.9
COL5A3P25940 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL5A3P25940 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL5A3P25940 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
COL5A3P25940 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
COL5A3P25940 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.68■□□□□ 0.9
COL5A3P25940 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL5A3P25940 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC20.68■□□□□ 0.9
COL5A3P25940 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
COL5A3P25940 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC20.68■□□□□ 0.9
COL5A3P25940 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC20.68■□□□□ 0.9
COL5A3P25940 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
COL5A3P25940 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
COL5A3P25940 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL5A3P25940 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
COL5A3P25940 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.67■□□□□ 0.9
COL5A3P25940 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL5A3P25940 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC20.67■□□□□ 0.9
COL5A3P25940 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC20.67■□□□□ 0.9
COL5A3P25940 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL5A3P25940 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC20.67■□□□□ 0.9
COL5A3P25940 FADS2-205ENST00000517839 469 ntTSL 3 BASIC20.67■□□□□ 0.9
COL5A3P25940 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms