Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 PRAL-201ENST00000624952 3286 ntBASIC16.89■□□□□ 0.29
VIMP08670 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
VIMP08670 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.89■□□□□ 0.29
VIMP08670 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
VIMP08670 AL135999.2-201ENST00000622438 1686 ntBASIC16.88■□□□□ 0.29
VIMP08670 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
VIMP08670 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC16.88■□□□□ 0.29
VIMP08670 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VIMP08670 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VIMP08670 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VIMP08670 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VIMP08670 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VIMP08670 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VIMP08670 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VIMP08670 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VIMP08670 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.88■□□□□ 0.29
VIMP08670 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
VIMP08670 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
VIMP08670 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VIMP08670 TSPY20P-201ENST00000450910 630 ntBASIC16.88■□□□□ 0.29
VIMP08670 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.88■□□□□ 0.29
VIMP08670 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.88■□□□□ 0.29
VIMP08670 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC16.88■□□□□ 0.29
VIMP08670 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.88■□□□□ 0.29
VIMP08670 MIR4785-201ENST00000585005 73 ntBASIC16.88■□□□□ 0.29
VIMP08670 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.88■□□□□ 0.29
VIMP08670 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
VIMP08670 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.88■□□□□ 0.29
VIMP08670 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
VIMP08670 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VIMP08670 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VIMP08670 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VIMP08670 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VIMP08670 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
VIMP08670 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.88■□□□□ 0.29
VIMP08670 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.88■□□□□ 0.29
VIMP08670 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
VIMP08670 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
VIMP08670 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.88■□□□□ 0.29
VIMP08670 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC16.88■□□□□ 0.29
VIMP08670 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VIMP08670 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
VIMP08670 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.87■□□□□ 0.29
VIMP08670 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.87■□□□□ 0.29
VIMP08670 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VIMP08670 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
VIMP08670 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.87■□□□□ 0.29
VIMP08670 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.87■□□□□ 0.29
VIMP08670 AL390955.1-201ENST00000428694 934 ntBASIC16.87■□□□□ 0.29
VIMP08670 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.87■□□□□ 0.29
VIMP08670 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.87■□□□□ 0.29
VIMP08670 RBM17P1-201ENST00000453646 1190 ntBASIC16.87■□□□□ 0.29
VIMP08670 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 AP003071.4-201ENST00000562276 1284 ntBASIC16.87■□□□□ 0.29
VIMP08670 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
VIMP08670 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.87■□□□□ 0.29
VIMP08670 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.87■□□□□ 0.29
VIMP08670 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
VIMP08670 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.87■□□□□ 0.29
VIMP08670 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
VIMP08670 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VIMP08670 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.86■□□□□ 0.29
VIMP08670 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms