Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-DOAP06340 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
HLA-DOAP06340 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.64■□□□□ 0.73
HLA-DOAP06340 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC19.64■□□□□ 0.73
HLA-DOAP06340 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC19.64■□□□□ 0.73
HLA-DOAP06340 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC19.64■□□□□ 0.73
HLA-DOAP06340 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.64■□□□□ 0.73
HLA-DOAP06340 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-DOAP06340 GREM1-201ENST00000560677 623 ntTSL 4 BASIC19.64■□□□□ 0.73
HLA-DOAP06340 MIR4745-201ENST00000577608 62 ntBASIC19.64■□□□□ 0.73
HLA-DOAP06340 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.64■□□□□ 0.73
HLA-DOAP06340 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC19.64■□□□□ 0.73
HLA-DOAP06340 AC018529.1-201ENST00000613063 361 ntBASIC19.64■□□□□ 0.73
HLA-DOAP06340 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-DOAP06340 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-DOAP06340 AP3S2-216ENST00000617003 1561 ntBASIC19.64■□□□□ 0.73
HLA-DOAP06340 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.64■□□□□ 0.73
HLA-DOAP06340 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-DOAP06340 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.64■□□□□ 0.73
HLA-DOAP06340 SNX33P1-201ENST00000592116 1762 ntBASIC19.64■□□□□ 0.73
HLA-DOAP06340 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC19.64■□□□□ 0.73
HLA-DOAP06340 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC19.64■□□□□ 0.73
HLA-DOAP06340 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-DOAP06340 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-DOAP06340 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.63■□□□□ 0.73
HLA-DOAP06340 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.63■□□□□ 0.73
HLA-DOAP06340 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
HLA-DOAP06340 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.63■□□□□ 0.73
HLA-DOAP06340 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC19.63■□□□□ 0.73
HLA-DOAP06340 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
HLA-DOAP06340 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC19.63■□□□□ 0.73
HLA-DOAP06340 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.63■□□□□ 0.73
HLA-DOAP06340 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.63■□□□□ 0.73
HLA-DOAP06340 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.63■□□□□ 0.73
HLA-DOAP06340 CALY-203ENST00000368558 825 ntTSL 5 BASIC19.63■□□□□ 0.73
HLA-DOAP06340 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC19.63■□□□□ 0.73
HLA-DOAP06340 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
HLA-DOAP06340 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC19.63■□□□□ 0.73
HLA-DOAP06340 AL390754.1-201ENST00000619088 582 ntBASIC19.63■□□□□ 0.73
HLA-DOAP06340 AL139011.1-202ENST00000642063 584 ntBASIC19.63■□□□□ 0.73
HLA-DOAP06340 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DOAP06340 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
HLA-DOAP06340 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DOAP06340 AC073439.1-201ENST00000624121 1774 ntBASIC19.62■□□□□ 0.73
HLA-DOAP06340 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
HLA-DOAP06340 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DOAP06340 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DOAP06340 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DOAP06340 HLA-H-201ENST00000383620 1096 ntBASIC19.62■□□□□ 0.73
HLA-DOAP06340 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC19.62■□□□□ 0.73
HLA-DOAP06340 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
HLA-DOAP06340 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DOAP06340 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC19.62■□□□□ 0.73
HLA-DOAP06340 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DOAP06340 NAA60-208ENST00000570819 833 ntTSL 2 BASIC19.62■□□□□ 0.73
HLA-DOAP06340 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DOAP06340 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DOAP06340 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC19.62■□□□□ 0.73
HLA-DOAP06340 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC19.62■□□□□ 0.73
HLA-DOAP06340 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DOAP06340 AC139713.2-201ENST00000641328 2723 ntBASIC19.62■□□□□ 0.73
HLA-DOAP06340 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DOAP06340 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19.62■□□□□ 0.73
HLA-DOAP06340 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DOAP06340 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
HLA-DOAP06340 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DOAP06340 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DOAP06340 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DOAP06340 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
HLA-DOAP06340 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.61■□□□□ 0.73
HLA-DOAP06340 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HLA-DOAP06340 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC19.61■□□□□ 0.73
HLA-DOAP06340 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HLA-DOAP06340 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
HLA-DOAP06340 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
HLA-DOAP06340 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
HLA-DOAP06340 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
HLA-DOAP06340 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HLA-DOAP06340 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HLA-DOAP06340 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.61■□□□□ 0.73
HLA-DOAP06340 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
HLA-DOAP06340 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HLA-DOAP06340 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HLA-DOAP06340 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms