Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.33■□□□□ 0.21
SDC3O75056 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SDC3O75056 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SDC3O75056 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
SDC3O75056 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
SDC3O75056 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.21
SDC3O75056 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SDC3O75056 PRORSD1P-202ENST00000563365 2154 ntBASIC16.33■□□□□ 0.2
SDC3O75056 AC068880.1-201ENST00000507289 2297 ntBASIC16.33■□□□□ 0.2
SDC3O75056 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC3O75056 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.33■□□□□ 0.2
SDC3O75056 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC3O75056 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SDC3O75056 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.33■□□□□ 0.2
SDC3O75056 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC3O75056 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC3O75056 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SDC3O75056 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC3O75056 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
SDC3O75056 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
SDC3O75056 AC005034.1-201ENST00000426657 489 ntBASIC16.33■□□□□ 0.2
SDC3O75056 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.33■□□□□ 0.2
SDC3O75056 AC092580.3-201ENST00000430932 139 ntBASIC16.33■□□□□ 0.2
SDC3O75056 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.33■□□□□ 0.2
SDC3O75056 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.33■□□□□ 0.2
SDC3O75056 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.33■□□□□ 0.2
SDC3O75056 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.33■□□□□ 0.2
SDC3O75056 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.33■□□□□ 0.2
SDC3O75056 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.33■□□□□ 0.2
SDC3O75056 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC3O75056 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.33■□□□□ 0.2
SDC3O75056 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC3O75056 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SDC3O75056 AL138688.1-201ENST00000624851 1594 ntBASIC16.33■□□□□ 0.2
SDC3O75056 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
SDC3O75056 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.33■□□□□ 0.2
SDC3O75056 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC3O75056 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.33■□□□□ 0.2
SDC3O75056 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC3O75056 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC3O75056 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC3O75056 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
SDC3O75056 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SDC3O75056 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.32■□□□□ 0.2
SDC3O75056 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.32■□□□□ 0.2
SDC3O75056 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
SDC3O75056 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.32■□□□□ 0.2
SDC3O75056 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.32■□□□□ 0.2
SDC3O75056 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.32■□□□□ 0.2
SDC3O75056 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.32■□□□□ 0.2
SDC3O75056 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.32■□□□□ 0.2
SDC3O75056 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.32■□□□□ 0.2
SDC3O75056 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.32■□□□□ 0.2
SDC3O75056 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.32■□□□□ 0.2
SDC3O75056 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SDC3O75056 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.32■□□□□ 0.2
SDC3O75056 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.32■□□□□ 0.2
SDC3O75056 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.32■□□□□ 0.2
SDC3O75056 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.32■□□□□ 0.2
SDC3O75056 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.32■□□□□ 0.2
SDC3O75056 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.32■□□□□ 0.2
SDC3O75056 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.32■□□□□ 0.2
SDC3O75056 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.32■□□□□ 0.2
SDC3O75056 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.32■□□□□ 0.2
SDC3O75056 AC003101.2-201ENST00000612557 442 ntBASIC16.32■□□□□ 0.2
SDC3O75056 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 AL035252.4-201ENST00000624174 288 ntBASIC16.32■□□□□ 0.2
SDC3O75056 AC008761.3-201ENST00000624803 892 ntBASIC16.32■□□□□ 0.2
SDC3O75056 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
SDC3O75056 CROCCP2-202ENST00000412962 2773 ntBASIC16.32■□□□□ 0.2
SDC3O75056 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC3O75056 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
SDC3O75056 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.31■□□□□ 0.2
SDC3O75056 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
SDC3O75056 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SDC3O75056 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms