Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC073439.1-201ENST00000624121 1774 ntBASIC16.97■□□□□ 0.31
HOXC11O43248 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
HOXC11O43248 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
HOXC11O43248 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
HOXC11O43248 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.96■□□□□ 0.31
HOXC11O43248 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.96■□□□□ 0.31
HOXC11O43248 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC11O43248 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.96■□□□□ 0.31
HOXC11O43248 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC11O43248 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.96■□□□□ 0.31
HOXC11O43248 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.96■□□□□ 0.31
HOXC11O43248 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC11O43248 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
HOXC11O43248 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.96■□□□□ 0.31
HOXC11O43248 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC11O43248 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.96■□□□□ 0.31
HOXC11O43248 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC11O43248 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.96■□□□□ 0.31
HOXC11O43248 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.96■□□□□ 0.31
HOXC11O43248 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC11O43248 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.96■□□□□ 0.31
HOXC11O43248 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.96■□□□□ 0.31
HOXC11O43248 AC092580.3-201ENST00000430932 139 ntBASIC16.96■□□□□ 0.31
HOXC11O43248 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.96■□□□□ 0.31
HOXC11O43248 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.96■□□□□ 0.31
HOXC11O43248 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.96■□□□□ 0.31
HOXC11O43248 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC11O43248 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.96■□□□□ 0.31
HOXC11O43248 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC11O43248 AC007967.4-201ENST00000614700 386 ntBASIC16.96■□□□□ 0.31
HOXC11O43248 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC11O43248 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.96■□□□□ 0.31
HOXC11O43248 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC11O43248 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC11O43248 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.31
HOXC11O43248 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC11O43248 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC11O43248 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HOXC11O43248 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HOXC11O43248 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
HOXC11O43248 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.96■□□□□ 0.3
HOXC11O43248 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC11O43248 AC046158.3-201ENST00000624947 2558 ntBASIC16.95■□□□□ 0.3
HOXC11O43248 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC11O43248 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
HOXC11O43248 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC11O43248 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC11O43248 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC11O43248 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
HOXC11O43248 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
HOXC11O43248 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC11O43248 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.95■□□□□ 0.3
HOXC11O43248 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC11O43248 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC11O43248 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC11O43248 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.95■□□□□ 0.3
HOXC11O43248 FAM220BP-201ENST00000377689 816 ntBASIC16.95■□□□□ 0.3
HOXC11O43248 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.95■□□□□ 0.3
HOXC11O43248 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.95■□□□□ 0.3
HOXC11O43248 AC138761.1-201ENST00000584393 385 ntBASIC16.95■□□□□ 0.3
HOXC11O43248 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.95■□□□□ 0.3
HOXC11O43248 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC11O43248 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC11O43248 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
HOXC11O43248 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
HOXC11O43248 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.95■□□□□ 0.3
HOXC11O43248 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC11O43248 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC11O43248 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC11O43248 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HOXC11O43248 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.95■□□□□ 0.3
HOXC11O43248 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC11O43248 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
HOXC11O43248 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.95■□□□□ 0.3
HOXC11O43248 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC11O43248 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC11O43248 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.94■□□□□ 0.3
HOXC11O43248 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC11O43248 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
HOXC11O43248 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.94■□□□□ 0.3
HOXC11O43248 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.94■□□□□ 0.3
HOXC11O43248 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC11O43248 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC11O43248 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC11O43248 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HOXC11O43248 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC11O43248 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.94■□□□□ 0.3
HOXC11O43248 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.94■□□□□ 0.3
HOXC11O43248 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC11O43248 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC11O43248 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.94■□□□□ 0.3
HOXC11O43248 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.94■□□□□ 0.3
HOXC11O43248 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC11O43248 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HOXC11O43248 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.94■□□□□ 0.3
HOXC11O43248 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.94■□□□□ 0.3
HOXC11O43248 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
HOXC11O43248 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.94■□□□□ 0.3
HOXC11O43248 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC11O43248 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms