Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 BCRP1-201ENST00000444246 691 ntBASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 IGHV3-62-201ENST00000520057 340 ntBASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 AC109635.5-201ENST00000533593 962 ntBASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 AC243562.1-201ENST00000560672 389 ntBASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 AL009183.1-201ENST00000603760 355 ntBASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 AC133963.1-201ENST00000504166 1679 ntBASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SSX2IPQ9Y2D8 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 AP001059.3-201ENST00000619053 235 ntBASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SSX2IPQ9Y2D8 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
SSX2IPQ9Y2D8 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SSX2IPQ9Y2D8 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SSX2IPQ9Y2D8 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
SSX2IPQ9Y2D8 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.47
SSX2IPQ9Y2D8 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.02■□□□□ 0.47
SSX2IPQ9Y2D8 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SSX2IPQ9Y2D8 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.02■□□□□ 0.47
SSX2IPQ9Y2D8 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 DUX4L17-201ENST00000557360 1267 ntBASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC18.01■□□□□ 0.47
SSX2IPQ9Y2D8 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SSX2IPQ9Y2D8 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
SSX2IPQ9Y2D8 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18■□□□□ 0.47
SSX2IPQ9Y2D8 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC18■□□□□ 0.47
SSX2IPQ9Y2D8 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18■□□□□ 0.47
SSX2IPQ9Y2D8 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SSX2IPQ9Y2D8 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SSX2IPQ9Y2D8 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SSX2IPQ9Y2D8 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18■□□□□ 0.47
SSX2IPQ9Y2D8 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SSX2IPQ9Y2D8 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18■□□□□ 0.47
SSX2IPQ9Y2D8 AC092474.2-201ENST00000424288 719 ntBASIC18■□□□□ 0.47
SSX2IPQ9Y2D8 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SSX2IPQ9Y2D8 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18■□□□□ 0.47
SSX2IPQ9Y2D8 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms