Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHANK3Q9BYB0 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK3Q9BYB0 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK3Q9BYB0 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
SHANK3Q9BYB0 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK3Q9BYB0 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHANK3Q9BYB0 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHANK3Q9BYB0 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
SHANK3Q9BYB0 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC21.3■■□□□ 1
SHANK3Q9BYB0 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK3Q9BYB0 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK3Q9BYB0 FAM86MP-201ENST00000340703 885 ntBASIC21.3■■□□□ 1
SHANK3Q9BYB0 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
SHANK3Q9BYB0 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC21.3■■□□□ 1
SHANK3Q9BYB0 AC234783.1-201ENST00000441761 496 ntBASIC21.3■■□□□ 1
SHANK3Q9BYB0 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC21.3■■□□□ 1
SHANK3Q9BYB0 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC21.3■■□□□ 1
SHANK3Q9BYB0 MYCLP2-201ENST00000449268 967 ntBASIC21.3■■□□□ 1
SHANK3Q9BYB0 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC21.3■■□□□ 1
SHANK3Q9BYB0 AL512343.1-201ENST00000605837 169 ntBASIC21.3■■□□□ 1
SHANK3Q9BYB0 AL158212.4-201ENST00000624062 1286 ntBASIC21.3■■□□□ 1
SHANK3Q9BYB0 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK3Q9BYB0 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC21.3■■□□□ 1
SHANK3Q9BYB0 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC21.3■■□□□ 1
SHANK3Q9BYB0 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK3Q9BYB0 AL136982.4-201ENST00000437689 1740 ntBASIC21.3■■□□□ 1
SHANK3Q9BYB0 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK3Q9BYB0 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK3Q9BYB0 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC21.3■■□□□ 1
SHANK3Q9BYB0 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK3Q9BYB0 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.3■■□□□ 1
SHANK3Q9BYB0 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK3Q9BYB0 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK3Q9BYB0 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SHANK3Q9BYB0 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC21.3■■□□□ 1
SHANK3Q9BYB0 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC21.3■■□□□ 1
SHANK3Q9BYB0 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK3Q9BYB0 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC21.3■■□□□ 1
SHANK3Q9BYB0 CYP4F24P-201ENST00000586049 1580 ntBASIC21.3■■□□□ 1
SHANK3Q9BYB0 CLK3P2-201ENST00000427566 1453 ntBASIC21.29■■□□□ 1
SHANK3Q9BYB0 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHANK3Q9BYB0 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC21.29■■□□□ 1
SHANK3Q9BYB0 PACS1-203ENST00000524815 628 ntTSL 4 BASIC21.29■■□□□ 1
SHANK3Q9BYB0 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
SHANK3Q9BYB0 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHANK3Q9BYB0 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.29■■□□□ 1
SHANK3Q9BYB0 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHANK3Q9BYB0 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC21.29■■□□□ 1
SHANK3Q9BYB0 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHANK3Q9BYB0 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHANK3Q9BYB0 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHANK3Q9BYB0 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC21.29■■□□□ 1
SHANK3Q9BYB0 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC21.29■■□□□ 1
SHANK3Q9BYB0 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC21.29■■□□□ 1
SHANK3Q9BYB0 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC21.29■■□□□ 1
SHANK3Q9BYB0 RHOA-206ENST00000454011 889 ntTSL 2 BASIC21.29■■□□□ 1
SHANK3Q9BYB0 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC21.29■■□□□ 1
SHANK3Q9BYB0 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
SHANK3Q9BYB0 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC21.29■■□□□ 1
SHANK3Q9BYB0 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
SHANK3Q9BYB0 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
SHANK3Q9BYB0 CD276-203ENST00000537340 2439 ntTSL 2 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
SHANK3Q9BYB0 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
SHANK3Q9BYB0 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHANK3Q9BYB0 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC21.28■■□□□ 1
SHANK3Q9BYB0 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC21.28■■□□□ 1
SHANK3Q9BYB0 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHANK3Q9BYB0 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
SHANK3Q9BYB0 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 AL645728.1-201ENST00000366221 2101 ntBASIC21.28■■□□□ 1
SHANK3Q9BYB0 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHANK3Q9BYB0 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHANK3Q9BYB0 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHANK3Q9BYB0 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
SHANK3Q9BYB0 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
SHANK3Q9BYB0 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SHANK3Q9BYB0 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC21.27■■□□□ 1
SHANK3Q9BYB0 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC21.27■■□□□ 1
SHANK3Q9BYB0 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC21.27■■□□□ 1
SHANK3Q9BYB0 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC21.27■■□□□ 1
SHANK3Q9BYB0 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC21.27■■□□□ 1
SHANK3Q9BYB0 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC21.27■■□□□ 1
SHANK3Q9BYB0 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SHANK3Q9BYB0 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms