Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 AC003669.1-201ENST00000334569 611 ntBASIC14.69□□□□□ -0.06
NKX3-1Q99801 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 NUS1P1-201ENST00000446295 882 ntBASIC14.69□□□□□ -0.06
NKX3-1Q99801 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 BCL10-202ENST00000620248 774 ntTSL 5 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 AC016734.2-201ENST00000624325 1377 ntBASIC14.69□□□□□ -0.06
NKX3-1Q99801 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 AC096582.2-201ENST00000510860 516 ntBASIC14.68□□□□□ -0.06
NKX3-1Q99801 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 AC011467.2-201ENST00000598425 242 ntBASIC14.68□□□□□ -0.06
NKX3-1Q99801 AL121672.3-201ENST00000608644 468 ntBASIC14.68□□□□□ -0.06
NKX3-1Q99801 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 AL356309.3-201ENST00000624132 1934 ntBASIC14.68□□□□□ -0.06
NKX3-1Q99801 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX3-1Q99801 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
NKX3-1Q99801 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms