Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 GPX1P2-201ENST00000429271 606 ntBASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 ALG1L5P-201ENST00000482043 771 ntBASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 NF2-208ENST00000403435 2568 ntTSL 5 BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 AC025580.3-201ENST00000617932 1424 ntBASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 UPF3AP3-201ENST00000420996 769 ntBASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 AGGF1P2-201ENST00000426656 2106 ntBASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 AC087163.2-201ENST00000457299 853 ntBASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 AC002347.1-201ENST00000569543 541 ntBASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 OVCH1-AS1-204ENST00000641955 5529 ntBASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4CQ96CF2 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 PRSS29P-201ENST00000440800 595 ntBASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 GGTLC5P-201ENST00000617623 998 ntBASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.97■□□□□ 0.79
CHMP4CQ96CF2 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4CQ96CF2 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4CQ96CF2 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC19.96■□□□□ 0.79
CHMP4CQ96CF2 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4CQ96CF2 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4CQ96CF2 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4CQ96CF2 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4CQ96CF2 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC19.96■□□□□ 0.79
CHMP4CQ96CF2 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4CQ96CF2 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CHMP4CQ96CF2 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.96■□□□□ 0.79
CHMP4CQ96CF2 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms