Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
ERCC4Q92889 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
ERCC4Q92889 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
ERCC4Q92889 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.08■□□□□ 0.64
ERCC4Q92889 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
ERCC4Q92889 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC19.07■□□□□ 0.64
ERCC4Q92889 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC19.07■□□□□ 0.64
ERCC4Q92889 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.07■□□□□ 0.64
ERCC4Q92889 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
ERCC4Q92889 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.07■□□□□ 0.64
ERCC4Q92889 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
ERCC4Q92889 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
ERCC4Q92889 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 ABCD1P5-201ENST00000445663 754 ntBASIC19.07■□□□□ 0.64
ERCC4Q92889 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.07■□□□□ 0.64
ERCC4Q92889 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.07■□□□□ 0.64
ERCC4Q92889 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.07■□□□□ 0.64
ERCC4Q92889 AP001269.4-201ENST00000609611 512 ntBASIC19.07■□□□□ 0.64
ERCC4Q92889 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.07■□□□□ 0.64
ERCC4Q92889 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.07■□□□□ 0.64
ERCC4Q92889 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC19.07■□□□□ 0.64
ERCC4Q92889 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
ERCC4Q92889 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC19.07■□□□□ 0.64
ERCC4Q92889 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC19.07■□□□□ 0.64
ERCC4Q92889 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.07■□□□□ 0.64
ERCC4Q92889 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ERCC4Q92889 AC079776.2-201ENST00000641154 1609 ntBASIC19.07■□□□□ 0.64
ERCC4Q92889 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.07■□□□□ 0.64
ERCC4Q92889 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.06■□□□□ 0.64
ERCC4Q92889 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ERCC4Q92889 TUBB8P12-201ENST00000308911 1335 ntBASIC19.06■□□□□ 0.64
ERCC4Q92889 TUBB7P-202ENST00000428444 1305 ntBASIC19.06■□□□□ 0.64
ERCC4Q92889 TUBB8P7-204ENST00000567960 1332 ntBASIC19.06■□□□□ 0.64
ERCC4Q92889 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ERCC4Q92889 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ERCC4Q92889 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.06■□□□□ 0.64
ERCC4Q92889 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ERCC4Q92889 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ERCC4Q92889 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
ERCC4Q92889 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ERCC4Q92889 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
ERCC4Q92889 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.06■□□□□ 0.64
ERCC4Q92889 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.06■□□□□ 0.64
ERCC4Q92889 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.06■□□□□ 0.64
ERCC4Q92889 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.06■□□□□ 0.64
ERCC4Q92889 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.06■□□□□ 0.64
ERCC4Q92889 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19.06■□□□□ 0.64
ERCC4Q92889 AC138894.3-201ENST00000603787 634 ntBASIC19.06■□□□□ 0.64
ERCC4Q92889 AC064862.7-201ENST00000604520 867 ntBASIC19.06■□□□□ 0.64
ERCC4Q92889 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.06■□□□□ 0.64
ERCC4Q92889 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ERCC4Q92889 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
ERCC4Q92889 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ERCC4Q92889 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ERCC4Q92889 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.06■□□□□ 0.64
ERCC4Q92889 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ERCC4Q92889 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ERCC4Q92889 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC19.05■□□□□ 0.64
ERCC4Q92889 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.05■□□□□ 0.64
ERCC4Q92889 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
ERCC4Q92889 AP002414.1-201ENST00000391405 1147 ntBASIC19.05■□□□□ 0.64
ERCC4Q92889 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.05■□□□□ 0.64
ERCC4Q92889 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.05■□□□□ 0.64
ERCC4Q92889 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.05■□□□□ 0.64
ERCC4Q92889 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.05■□□□□ 0.64
ERCC4Q92889 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 S100A2-206ENST00000497140 697 ntTSL 2 BASIC19.05■□□□□ 0.64
ERCC4Q92889 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.05■□□□□ 0.64
ERCC4Q92889 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms