Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NKX2-3Q8TAU0 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC19.74■□□□□ 0.75
NKX2-3Q8TAU0 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.74■□□□□ 0.75
NKX2-3Q8TAU0 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
NKX2-3Q8TAU0 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NKX2-3Q8TAU0 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
NKX2-3Q8TAU0 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.74■□□□□ 0.75
NKX2-3Q8TAU0 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NKX2-3Q8TAU0 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
NKX2-3Q8TAU0 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
NKX2-3Q8TAU0 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.74■□□□□ 0.75
NKX2-3Q8TAU0 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.74■□□□□ 0.75
NKX2-3Q8TAU0 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NKX2-3Q8TAU0 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 HLA-V-201ENST00000429037 534 ntBASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 AC007274.1-201ENST00000439805 662 ntBASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 AL009183.1-201ENST00000603760 355 ntBASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 AC009093.7-201ENST00000623853 1223 ntBASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NKX2-3Q8TAU0 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 TFAMP1-201ENST00000412727 736 ntBASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 HNRNPA1P40-201ENST00000426371 1278 ntBASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 GSAP-205ENST00000430584 600 ntTSL 5 BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 AC055876.3-201ENST00000431496 288 ntBASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 TSPY16P-201ENST00000449843 468 ntBASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 IGHV3OR16-6-201ENST00000568775 360 ntBASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 AL359881.2-201ENST00000602973 570 ntBASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 AL008721.1-201ENST00000609964 604 ntBASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 AC138649.4-201ENST00000612222 287 ntBASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 AC079328.2-201ENST00000561241 3354 ntBASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NKX2-3Q8TAU0 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 GGT4P-201ENST00000623672 1708 ntBASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 HCG4-201ENST00000418983 998 ntBASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 FAM207CP-201ENST00000443486 507 ntBASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 MTRF1LP2-201ENST00000506027 1122 ntBASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
NKX2-3Q8TAU0 GATB-205ENST00000508611 605 ntTSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms