Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 AL645728.1-201ENST00000366221 2101 ntBASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 AC106795.1-205ENST00000512851 1056 ntBASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 AL589182.2-201ENST00000619332 1049 ntBASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 AC243591.1-201ENST00000452967 1364 ntBASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC54Q8NEL0 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 COPS8-203ENST00000409334 794 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 NUS1P2-201ENST00000417358 873 ntBASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 CYB561-217ENST00000582997 877 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC54Q8NEL0 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 AC006277.1-201ENST00000624348 1610 ntBASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 TOP3BP1-201ENST00000420768 1380 ntBASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 MED16-201ENST00000269814 1199 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms