Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CXCL12P48061 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.53■□□□□ 0.24
CXCL12P48061 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.53■□□□□ 0.24
CXCL12P48061 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CXCL12P48061 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CXCL12P48061 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.53■□□□□ 0.24
CXCL12P48061 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.53■□□□□ 0.24
CXCL12P48061 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.53■□□□□ 0.24
CXCL12P48061 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.53■□□□□ 0.24
CXCL12P48061 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CXCL12P48061 OR6D1P-202ENST00000641007 5290 ntBASIC16.53■□□□□ 0.24
CXCL12P48061 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.53■□□□□ 0.24
CXCL12P48061 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.53■□□□□ 0.24
CXCL12P48061 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.53■□□□□ 0.24
CXCL12P48061 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CXCL12P48061 SPDYE18-201ENST00000510091 1050 ntBASIC16.53■□□□□ 0.24
CXCL12P48061 SDHAP3-202ENST00000515467 728 ntBASIC16.53■□□□□ 0.24
CXCL12P48061 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.53■□□□□ 0.24
CXCL12P48061 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.53■□□□□ 0.24
CXCL12P48061 AL512343.1-201ENST00000605837 169 ntBASIC16.53■□□□□ 0.24
CXCL12P48061 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.53■□□□□ 0.24
CXCL12P48061 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CXCL12P48061 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CXCL12P48061 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CXCL12P48061 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CXCL12P48061 BICD1-207ENST00000551848 1962 ntBASIC16.53■□□□□ 0.24
CXCL12P48061 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CXCL12P48061 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CXCL12P48061 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CXCL12P48061 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CXCL12P48061 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CXCL12P48061 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CXCL12P48061 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CXCL12P48061 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CXCL12P48061 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CXCL12P48061 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CXCL12P48061 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
CXCL12P48061 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.52■□□□□ 0.24
CXCL12P48061 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.52■□□□□ 0.24
CXCL12P48061 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CXCL12P48061 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CXCL12P48061 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.52■□□□□ 0.24
CXCL12P48061 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CXCL12P48061 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.52■□□□□ 0.24
CXCL12P48061 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
CXCL12P48061 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CXCL12P48061 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CXCL12P48061 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
CXCL12P48061 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.52■□□□□ 0.24
CXCL12P48061 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC16.52■□□□□ 0.24
CXCL12P48061 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.52■□□□□ 0.24
CXCL12P48061 AC245100.3-201ENST00000441281 285 ntBASIC16.52■□□□□ 0.24
CXCL12P48061 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CXCL12P48061 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC16.52■□□□□ 0.24
CXCL12P48061 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CXCL12P48061 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.52■□□□□ 0.24
CXCL12P48061 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.52■□□□□ 0.24
CXCL12P48061 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC16.52■□□□□ 0.24
CXCL12P48061 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.52■□□□□ 0.24
CXCL12P48061 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.52■□□□□ 0.24
CXCL12P48061 AL033527.5-202ENST00000641632 1098 ntBASIC16.52■□□□□ 0.24
CXCL12P48061 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CXCL12P48061 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CXCL12P48061 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.52■□□□□ 0.24
CXCL12P48061 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CXCL12P48061 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CXCL12P48061 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CXCL12P48061 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.52■□□□□ 0.23
CXCL12P48061 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CXCL12P48061 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.52■□□□□ 0.23
CXCL12P48061 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CXCL12P48061 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL12P48061 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL12P48061 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.51■□□□□ 0.23
CXCL12P48061 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.51■□□□□ 0.23
CXCL12P48061 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CXCL12P48061 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL12P48061 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.51■□□□□ 0.23
CXCL12P48061 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.51■□□□□ 0.23
CXCL12P48061 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.51■□□□□ 0.23
CXCL12P48061 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CXCL12P48061 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL12P48061 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL12P48061 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL12P48061 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL12P48061 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CXCL12P48061 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL12P48061 AC234783.1-201ENST00000441761 496 ntBASIC16.51■□□□□ 0.23
CXCL12P48061 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.51■□□□□ 0.23
CXCL12P48061 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.51■□□□□ 0.23
CXCL12P48061 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.51■□□□□ 0.23
CXCL12P48061 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.51■□□□□ 0.23
CXCL12P48061 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.51■□□□□ 0.23
CXCL12P48061 AP005482.1-201ENST00000563722 1273 ntBASIC16.51■□□□□ 0.23
CXCL12P48061 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.51■□□□□ 0.23
CXCL12P48061 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.51■□□□□ 0.23
CXCL12P48061 AC024267.1-201ENST00000582320 895 ntBASIC16.51■□□□□ 0.23
CXCL12P48061 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC16.51■□□□□ 0.23
CXCL12P48061 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.51■□□□□ 0.23
CXCL12P48061 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms