Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC021097.1-201ENST00000607902 574 ntBASIC17.4■□□□□ 0.38
PTPN9P43378 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.4■□□□□ 0.38
PTPN9P43378 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.4■□□□□ 0.38
PTPN9P43378 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.4■□□□□ 0.38
PTPN9P43378 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.4■□□□□ 0.38
PTPN9P43378 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.4■□□□□ 0.38
PTPN9P43378 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PTPN9P43378 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
PTPN9P43378 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
PTPN9P43378 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PTPN9P43378 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PTPN9P43378 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN9P43378 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN9P43378 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN9P43378 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN9P43378 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN9P43378 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN9P43378 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN9P43378 ME2P1-201ENST00000426028 1970 ntBASIC17.39■□□□□ 0.37
PTPN9P43378 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN9P43378 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN9P43378 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
PTPN9P43378 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN9P43378 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.39■□□□□ 0.37
PTPN9P43378 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN9P43378 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN9P43378 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN9P43378 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.39■□□□□ 0.37
PTPN9P43378 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.39■□□□□ 0.37
PTPN9P43378 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.39■□□□□ 0.37
PTPN9P43378 AC109635.5-201ENST00000533593 962 ntBASIC17.39■□□□□ 0.37
PTPN9P43378 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.39■□□□□ 0.37
PTPN9P43378 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.39■□□□□ 0.37
PTPN9P43378 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.39■□□□□ 0.37
PTPN9P43378 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN9P43378 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN9P43378 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN9P43378 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN9P43378 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
PTPN9P43378 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN9P43378 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN9P43378 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
PTPN9P43378 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
PTPN9P43378 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN9P43378 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN9P43378 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN9P43378 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN9P43378 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.39■□□□□ 0.37
PTPN9P43378 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN9P43378 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PTPN9P43378 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PTPN9P43378 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN9P43378 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PTPN9P43378 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PTPN9P43378 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.38■□□□□ 0.37
PTPN9P43378 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PTPN9P43378 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
PTPN9P43378 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN9P43378 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.38■□□□□ 0.37
PTPN9P43378 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN9P43378 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN9P43378 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
PTPN9P43378 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PTPN9P43378 AC140658.5-201ENST00000438532 169 ntBASIC17.38■□□□□ 0.37
PTPN9P43378 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.38■□□□□ 0.37
PTPN9P43378 PDPK2P-202ENST00000562415 1191 ntBASIC17.38■□□□□ 0.37
PTPN9P43378 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.38■□□□□ 0.37
PTPN9P43378 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.38■□□□□ 0.37
PTPN9P43378 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN9P43378 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN9P43378 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN9P43378 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.38■□□□□ 0.37
PTPN9P43378 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN9P43378 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN9P43378 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN9P43378 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN9P43378 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
PTPN9P43378 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
PTPN9P43378 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 ALOX12P2-203ENST00000570921 1945 ntBASIC17.37■□□□□ 0.37
PTPN9P43378 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
PTPN9P43378 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.37■□□□□ 0.37
PTPN9P43378 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.37■□□□□ 0.37
PTPN9P43378 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.37■□□□□ 0.37
PTPN9P43378 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.37■□□□□ 0.37
PTPN9P43378 AL022342.1-201ENST00000400363 863 ntBASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms