Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.31■□□□□ 0.2
HNF4AP41235 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 AC073621.1-201ENST00000392730 636 ntBASIC16.31■□□□□ 0.2
HNF4AP41235 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.31■□□□□ 0.2
HNF4AP41235 KRT18P27-201ENST00000427733 1299 ntBASIC16.31■□□□□ 0.2
HNF4AP41235 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.31■□□□□ 0.2
HNF4AP41235 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 HLA-J-202ENST00000469281 1241 ntBASIC16.31■□□□□ 0.2
HNF4AP41235 RPS15P9-201ENST00000494093 319 ntBASIC16.31■□□□□ 0.2
HNF4AP41235 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.31■□□□□ 0.2
HNF4AP41235 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.31■□□□□ 0.2
HNF4AP41235 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HNF4AP41235 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 GGTLC5P-201ENST00000617623 998 ntBASIC16.31■□□□□ 0.2
HNF4AP41235 AC116407.3-201ENST00000623905 1129 ntBASIC16.31■□□□□ 0.2
HNF4AP41235 AL139011.1-202ENST00000642063 584 ntBASIC16.31■□□□□ 0.2
HNF4AP41235 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.31■□□□□ 0.2
HNF4AP41235 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 AL603756.1-201ENST00000606511 2163 ntBASIC16.31■□□□□ 0.2
HNF4AP41235 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.31■□□□□ 0.2
HNF4AP41235 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
HNF4AP41235 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.31■□□□□ 0.2
HNF4AP41235 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.31■□□□□ 0.2
HNF4AP41235 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HNF4AP41235 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.31■□□□□ 0.2
HNF4AP41235 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HNF4AP41235 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HNF4AP41235 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
HNF4AP41235 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HNF4AP41235 NFIC-211ENST00000641145 8399 ntBASIC16.3■□□□□ 0.2
HNF4AP41235 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HNF4AP41235 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.3■□□□□ 0.2
HNF4AP41235 AC006277.1-201ENST00000624348 1610 ntBASIC16.3■□□□□ 0.2
HNF4AP41235 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.3■□□□□ 0.2
HNF4AP41235 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HNF4AP41235 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HNF4AP41235 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HNF4AP41235 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.3■□□□□ 0.2
HNF4AP41235 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.3■□□□□ 0.2
HNF4AP41235 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.3■□□□□ 0.2
HNF4AP41235 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HNF4AP41235 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.3■□□□□ 0.2
HNF4AP41235 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.3■□□□□ 0.2
HNF4AP41235 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.3■□□□□ 0.2
HNF4AP41235 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.3■□□□□ 0.2
HNF4AP41235 RNA5SP419-201ENST00000515908 135 ntBASIC16.3■□□□□ 0.2
HNF4AP41235 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HNF4AP41235 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HNF4AP41235 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.3■□□□□ 0.2
HNF4AP41235 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.3■□□□□ 0.2
HNF4AP41235 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.3■□□□□ 0.2
HNF4AP41235 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.3■□□□□ 0.2
HNF4AP41235 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.3■□□□□ 0.2
HNF4AP41235 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.3■□□□□ 0.2
HNF4AP41235 AC005593.1-201ENST00000624894 515 ntBASIC16.3■□□□□ 0.2
HNF4AP41235 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HNF4AP41235 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HNF4AP41235 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
HNF4AP41235 HLA-A-202ENST00000376806 1854 ntBASIC16.3■□□□□ 0.2
HNF4AP41235 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.3■□□□□ 0.2
HNF4AP41235 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
HNF4AP41235 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.3■□□□□ 0.2
HNF4AP41235 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.3■□□□□ 0.2
HNF4AP41235 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HNF4AP41235 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HNF4AP41235 AL162727.3-201ENST00000635661 2787 ntBASIC16.3■□□□□ 0.2
HNF4AP41235 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HNF4AP41235 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HNF4AP41235 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HNF4AP41235 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
HNF4AP41235 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HNF4AP41235 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HNF4AP41235 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HNF4AP41235 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HNF4AP41235 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HNF4AP41235 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.29■□□□□ 0.2
HNF4AP41235 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.29■□□□□ 0.2
HNF4AP41235 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HNF4AP41235 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HNF4AP41235 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HNF4AP41235 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HNF4AP41235 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HNF4AP41235 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HNF4AP41235 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HNF4AP41235 AC002310.6-201ENST00000624451 1377 ntBASIC16.29■□□□□ 0.2
HNF4AP41235 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HNF4AP41235 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HNF4AP41235 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HNF4AP41235 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.29■□□□□ 0.2
HNF4AP41235 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HNF4AP41235 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HNF4AP41235 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.29■□□□□ 0.2
HNF4AP41235 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HNF4AP41235 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms