Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC14.23□□□□□ -0.13
USF1P22415 AL671277.1-201ENST00000429656 993 ntBASIC14.23□□□□□ -0.13
USF1P22415 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.23□□□□□ -0.13
USF1P22415 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.23□□□□□ -0.13
USF1P22415 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
USF1P22415 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
USF1P22415 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC14.23□□□□□ -0.13
USF1P22415 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.23□□□□□ -0.13
USF1P22415 RPL28-209ENST00000560055 670 ntTSL 3 BASIC14.23□□□□□ -0.13
USF1P22415 SPCS2P1-201ENST00000561636 679 ntBASIC14.23□□□□□ -0.13
USF1P22415 AC026120.1-201ENST00000611536 926 ntBASIC14.23□□□□□ -0.13
USF1P22415 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC14.23□□□□□ -0.13
USF1P22415 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
USF1P22415 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC14.23□□□□□ -0.13
USF1P22415 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 CYP51A1P2-201ENST00000419457 1499 ntBASIC14.23□□□□□ -0.13
USF1P22415 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
USF1P22415 BOC-212ENST00000485230 2173 ntTSL 2 BASIC14.23□□□□□ -0.13
USF1P22415 AC108860.2-201ENST00000562760 2183 ntBASIC14.23□□□□□ -0.13
USF1P22415 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 REXO1L11P-201ENST00000620964 1927 ntBASIC14.23□□□□□ -0.13
USF1P22415 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
USF1P22415 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
USF1P22415 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC14.23□□□□□ -0.13
USF1P22415 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC14.22□□□□□ -0.13
USF1P22415 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
USF1P22415 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
USF1P22415 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
USF1P22415 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
USF1P22415 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.22□□□□□ -0.13
USF1P22415 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.22□□□□□ -0.13
USF1P22415 AC005237.2-201ENST00000434368 219 ntBASIC14.22□□□□□ -0.13
USF1P22415 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC14.22□□□□□ -0.13
USF1P22415 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC14.22□□□□□ -0.13
USF1P22415 SPDYE11-202ENST00000450699 704 ntBASIC14.22□□□□□ -0.13
USF1P22415 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC14.22□□□□□ -0.13
USF1P22415 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC14.22□□□□□ -0.13
USF1P22415 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC14.22□□□□□ -0.13
USF1P22415 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC14.22□□□□□ -0.13
USF1P22415 SPDYE9P-201ENST00000570642 692 ntBASIC14.22□□□□□ -0.13
USF1P22415 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.22□□□□□ -0.13
USF1P22415 AL096865.1-201ENST00000606796 927 ntBASIC14.22□□□□□ -0.13
USF1P22415 SPDYE10P-202ENST00000612005 668 ntBASIC14.22□□□□□ -0.13
USF1P22415 SPDYE8P-202ENST00000612377 668 ntBASIC14.22□□□□□ -0.13
USF1P22415 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.22□□□□□ -0.13
USF1P22415 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
USF1P22415 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
USF1P22415 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 AC007326.2-201ENST00000624224 7579 ntBASIC14.22□□□□□ -0.13
USF1P22415 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC14.22□□□□□ -0.13
USF1P22415 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
USF1P22415 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
USF1P22415 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
USF1P22415 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC14.22□□□□□ -0.13
USF1P22415 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC14.22□□□□□ -0.13
USF1P22415 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC14.22□□□□□ -0.13
USF1P22415 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC14.22□□□□□ -0.13
USF1P22415 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
USF1P22415 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USF1P22415 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
USF1P22415 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
USF1P22415 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
USF1P22415 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC14.21□□□□□ -0.13
USF1P22415 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
USF1P22415 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
USF1P22415 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms