Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.77■□□□□ 0.28
XRCC1P18887 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
XRCC1P18887 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
XRCC1P18887 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
XRCC1P18887 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.77■□□□□ 0.28
XRCC1P18887 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
XRCC1P18887 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
XRCC1P18887 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.77■□□□□ 0.28
XRCC1P18887 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
XRCC1P18887 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.77■□□□□ 0.28
XRCC1P18887 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.77■□□□□ 0.28
XRCC1P18887 AC007967.2-201ENST00000432613 625 ntBASIC16.77■□□□□ 0.28
XRCC1P18887 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.77■□□□□ 0.28
XRCC1P18887 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
XRCC1P18887 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.77■□□□□ 0.28
XRCC1P18887 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.77■□□□□ 0.28
XRCC1P18887 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.77■□□□□ 0.28
XRCC1P18887 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
XRCC1P18887 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
XRCC1P18887 AC064836.3-201ENST00000607928 673 ntBASIC16.77■□□□□ 0.28
XRCC1P18887 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.77■□□□□ 0.28
XRCC1P18887 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.77■□□□□ 0.28
XRCC1P18887 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
XRCC1P18887 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.77■□□□□ 0.27
XRCC1P18887 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.77■□□□□ 0.27
XRCC1P18887 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
XRCC1P18887 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
XRCC1P18887 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
XRCC1P18887 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
XRCC1P18887 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
XRCC1P18887 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.77■□□□□ 0.27
XRCC1P18887 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.77■□□□□ 0.27
XRCC1P18887 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
XRCC1P18887 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
XRCC1P18887 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
XRCC1P18887 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
XRCC1P18887 AC078925.2-201ENST00000624013 1973 ntBASIC16.77■□□□□ 0.27
XRCC1P18887 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
XRCC1P18887 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
XRCC1P18887 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
XRCC1P18887 OR6D1P-203ENST00000641209 4860 ntBASIC16.76■□□□□ 0.27
XRCC1P18887 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
XRCC1P18887 LINC00554-201ENST00000564841 3011 ntBASIC16.76■□□□□ 0.27
XRCC1P18887 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.76■□□□□ 0.27
XRCC1P18887 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
XRCC1P18887 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
XRCC1P18887 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
XRCC1P18887 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.76■□□□□ 0.27
XRCC1P18887 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.76■□□□□ 0.27
XRCC1P18887 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
XRCC1P18887 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
XRCC1P18887 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
XRCC1P18887 MRPL20P1-201ENST00000400819 433 ntBASIC16.76■□□□□ 0.27
XRCC1P18887 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
XRCC1P18887 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
XRCC1P18887 VN2R19P-201ENST00000442399 1052 ntBASIC16.76■□□□□ 0.27
XRCC1P18887 AC040169.1-201ENST00000565382 521 ntBASIC16.76■□□□□ 0.27
XRCC1P18887 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
XRCC1P18887 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.76■□□□□ 0.27
XRCC1P18887 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
XRCC1P18887 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
XRCC1P18887 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
XRCC1P18887 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
XRCC1P18887 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.76■□□□□ 0.27
XRCC1P18887 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.76■□□□□ 0.27
XRCC1P18887 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
XRCC1P18887 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
XRCC1P18887 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
XRCC1P18887 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
XRCC1P18887 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.76■□□□□ 0.27
XRCC1P18887 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
XRCC1P18887 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.75■□□□□ 0.27
XRCC1P18887 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
XRCC1P18887 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
XRCC1P18887 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
XRCC1P18887 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.75■□□□□ 0.27
XRCC1P18887 AC132872.4-202ENST00000622924 2756 ntBASIC16.75■□□□□ 0.27
XRCC1P18887 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
XRCC1P18887 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
XRCC1P18887 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
XRCC1P18887 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.75■□□□□ 0.27
XRCC1P18887 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
XRCC1P18887 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
XRCC1P18887 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.75■□□□□ 0.27
XRCC1P18887 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.75■□□□□ 0.27
XRCC1P18887 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.75■□□□□ 0.27
XRCC1P18887 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.75■□□□□ 0.27
XRCC1P18887 MIR4751-201ENST00000578027 74 ntBASIC16.75■□□□□ 0.27
XRCC1P18887 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.75■□□□□ 0.27
XRCC1P18887 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.75■□□□□ 0.27
XRCC1P18887 AC010654.1-201ENST00000615722 808 ntBASIC16.75■□□□□ 0.27
XRCC1P18887 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
XRCC1P18887 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
XRCC1P18887 PI4KAP1-204ENST00000612579 1703 ntBASIC16.75■□□□□ 0.27
XRCC1P18887 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
XRCC1P18887 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
XRCC1P18887 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
XRCC1P18887 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.75■□□□□ 0.27
XRCC1P18887 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
XRCC1P18887 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms