Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 TUBB8P12-201ENST00000308911 1335 ntBASIC12.32□□□□□ -0.44
SMKR1H3BMG3 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 TUBB7P-202ENST00000428444 1305 ntBASIC12.32□□□□□ -0.44
SMKR1H3BMG3 TUBB8P7-204ENST00000567960 1332 ntBASIC12.32□□□□□ -0.44
SMKR1H3BMG3 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 AL135999.2-201ENST00000622438 1686 ntBASIC12.32□□□□□ -0.44
SMKR1H3BMG3 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 BID-213ENST00000615414 2236 ntTSL 5 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 SUPT20HL2-201ENST00000486479 2409 ntBASIC12.31□□□□□ -0.44
SMKR1H3BMG3 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 DDT-203ENST00000403754 569 ntTSL 3 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 DDT-206ENST00000430101 573 ntTSL 2 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 AC034232.1-201ENST00000506026 1064 ntBASIC12.31□□□□□ -0.44
SMKR1H3BMG3 GCSHP2-201ENST00000560971 527 ntBASIC12.31□□□□□ -0.44
SMKR1H3BMG3 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 GXYLT1P4-201ENST00000613576 1192 ntBASIC12.31□□□□□ -0.44
SMKR1H3BMG3 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
SMKR1H3BMG3 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms