Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 AC211486.1-202ENST00000416371 468 ntBASIC16.32■□□□□ 0.2
VPS4AQ9UN37 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 AC211476.1-201ENST00000503899 468 ntBASIC16.32■□□□□ 0.2
VPS4AQ9UN37 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 SART3-203ENST00000546611 1184 ntBASIC16.32■□□□□ 0.2
VPS4AQ9UN37 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 AC009336.1-201ENST00000608941 1553 ntBASIC16.32■□□□□ 0.2
VPS4AQ9UN37 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4AQ9UN37 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 KRT18P28-201ENST00000453838 1332 ntBASIC16.31■□□□□ 0.2
VPS4AQ9UN37 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 AC003669.1-201ENST00000334569 611 ntBASIC16.31■□□□□ 0.2
VPS4AQ9UN37 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 AC004832.2-201ENST00000426397 482 ntBASIC16.31■□□□□ 0.2
VPS4AQ9UN37 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 RNF216P1-203ENST00000404404 2427 ntBASIC16.31■□□□□ 0.2
VPS4AQ9UN37 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 INTS4P1-201ENST00000438455 1935 ntBASIC16.31■□□□□ 0.2
VPS4AQ9UN37 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
VPS4AQ9UN37 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 AL135999.2-201ENST00000622438 1686 ntBASIC16.3■□□□□ 0.2
VPS4AQ9UN37 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.3■□□□□ 0.2
VPS4AQ9UN37 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 AC092068.3-201ENST00000587894 2016 ntBASIC16.3■□□□□ 0.2
VPS4AQ9UN37 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 KLF4P1-201ENST00000412782 1185 ntBASIC16.3■□□□□ 0.2
VPS4AQ9UN37 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 AC008735.5-201ENST00000623544 497 ntBASIC16.3■□□□□ 0.2
VPS4AQ9UN37 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms