Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 LAGE3P1-201ENST00000425356 484 ntBASIC19.21■□□□□ 0.67
USP28Q96RU2 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 AC107918.2-201ENST00000530817 355 ntBASIC19.21■□□□□ 0.67
USP28Q96RU2 AC007950.2-201ENST00000615045 2347 ntBASIC19.21■□□□□ 0.67
USP28Q96RU2 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.21■□□□□ 0.67
USP28Q96RU2 AC107918.4-202ENST00000641623 219 ntBASIC19.21■□□□□ 0.67
USP28Q96RU2 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.21■□□□□ 0.67
USP28Q96RU2 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC19.21■□□□□ 0.67
USP28Q96RU2 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
USP28Q96RU2 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
USP28Q96RU2 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.21■□□□□ 0.67
USP28Q96RU2 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC19.21■□□□□ 0.67
USP28Q96RU2 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.2■□□□□ 0.66
USP28Q96RU2 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP28Q96RU2 AC131009.4-201ENST00000624048 1740 ntBASIC19.2■□□□□ 0.66
USP28Q96RU2 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP28Q96RU2 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC19.2■□□□□ 0.66
USP28Q96RU2 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP28Q96RU2 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP28Q96RU2 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP28Q96RU2 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP28Q96RU2 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP28Q96RU2 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.2■□□□□ 0.66
USP28Q96RU2 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP28Q96RU2 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.2■□□□□ 0.66
USP28Q96RU2 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.2■□□□□ 0.66
USP28Q96RU2 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.2■□□□□ 0.66
USP28Q96RU2 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
USP28Q96RU2 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.2■□□□□ 0.66
USP28Q96RU2 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.2■□□□□ 0.66
USP28Q96RU2 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
USP28Q96RU2 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
USP28Q96RU2 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP28Q96RU2 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
USP28Q96RU2 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.2■□□□□ 0.66
USP28Q96RU2 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP28Q96RU2 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP28Q96RU2 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP28Q96RU2 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP28Q96RU2 AC132872.4-202ENST00000622924 2756 ntBASIC19.2■□□□□ 0.66
USP28Q96RU2 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
USP28Q96RU2 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
USP28Q96RU2 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
USP28Q96RU2 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 KRT8P39-201ENST00000396270 1433 ntBASIC19.19■□□□□ 0.66
USP28Q96RU2 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
USP28Q96RU2 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 AC073621.1-201ENST00000392730 636 ntBASIC19.19■□□□□ 0.66
USP28Q96RU2 KRT18P27-201ENST00000427733 1299 ntBASIC19.19■□□□□ 0.66
USP28Q96RU2 UNC93B7-201ENST00000509439 705 ntBASIC19.19■□□□□ 0.66
USP28Q96RU2 CLEC4GP1-201ENST00000596555 870 ntBASIC19.19■□□□□ 0.66
USP28Q96RU2 IFNL4P1-201ENST00000607083 540 ntBASIC19.19■□□□□ 0.66
USP28Q96RU2 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.19■□□□□ 0.66
USP28Q96RU2 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.19■□□□□ 0.66
USP28Q96RU2 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
USP28Q96RU2 OR6D1P-203ENST00000641209 4860 ntBASIC19.19■□□□□ 0.66
USP28Q96RU2 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
USP28Q96RU2 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
USP28Q96RU2 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.19■□□□□ 0.66
USP28Q96RU2 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.19■□□□□ 0.66
USP28Q96RU2 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.19■□□□□ 0.66
USP28Q96RU2 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.19■□□□□ 0.66
USP28Q96RU2 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP28Q96RU2 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.18■□□□□ 0.66
USP28Q96RU2 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.18■□□□□ 0.66
USP28Q96RU2 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP28Q96RU2 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.18■□□□□ 0.66
USP28Q96RU2 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP28Q96RU2 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
USP28Q96RU2 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.18■□□□□ 0.66
USP28Q96RU2 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP28Q96RU2 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
USP28Q96RU2 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP28Q96RU2 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC19.18■□□□□ 0.66
USP28Q96RU2 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP28Q96RU2 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.18■□□□□ 0.66
USP28Q96RU2 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC19.18■□□□□ 0.66
USP28Q96RU2 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP28Q96RU2 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.18■□□□□ 0.66
USP28Q96RU2 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
USP28Q96RU2 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms