Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 AL589987.1-201ENST00000453380 819 ntBASIC16.35■□□□□ 0.21
VPS13AQ96RL7 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 AC009542.2-202ENST00000619004 1067 ntBASIC16.35■□□□□ 0.21
VPS13AQ96RL7 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 MCC-208ENST00000514701 2855 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 FAM21FP-201ENST00000426241 1131 ntBASIC16.34■□□□□ 0.21
VPS13AQ96RL7 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 RIT1-205ENST00000539040 919 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 AC015967.2-201ENST00000624092 234 ntBASIC16.34■□□□□ 0.21
VPS13AQ96RL7 AC006435.4-201ENST00000625037 234 ntBASIC16.34■□□□□ 0.21
VPS13AQ96RL7 AL356737.1-201ENST00000634391 234 ntBASIC16.34■□□□□ 0.21
VPS13AQ96RL7 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS13AQ96RL7 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
VPS13AQ96RL7 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VPS13AQ96RL7 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
VPS13AQ96RL7 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
VPS13AQ96RL7 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.33■□□□□ 0.21
VPS13AQ96RL7 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.21
VPS13AQ96RL7 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
VPS13AQ96RL7 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
VPS13AQ96RL7 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC16.33■□□□□ 0.21
VPS13AQ96RL7 AC006033.1-201ENST00000440505 426 ntBASIC16.33■□□□□ 0.21
VPS13AQ96RL7 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC16.33■□□□□ 0.21
VPS13AQ96RL7 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC16.33■□□□□ 0.21
VPS13AQ96RL7 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
VPS13AQ96RL7 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.33■□□□□ 0.21
VPS13AQ96RL7 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.33■□□□□ 0.21
VPS13AQ96RL7 AC106872.11-201ENST00000605838 421 ntBASIC16.33■□□□□ 0.21
VPS13AQ96RL7 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VPS13AQ96RL7 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 AC092337.1-201ENST00000568699 1129 ntBASIC16.33■□□□□ 0.2
VPS13AQ96RL7 AC091167.2-201ENST00000579581 588 ntBASIC16.33■□□□□ 0.2
VPS13AQ96RL7 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS13AQ96RL7 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms