Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 AC105339.3-201ENST00000560043 636 ntBASIC16.16■□□□□ 0.18
VMP1Q96GC9 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 BX640515.1-201ENST00000617215 977 ntBASIC16.16■□□□□ 0.18
VMP1Q96GC9 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VMP1Q96GC9 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VMP1Q96GC9 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VMP1Q96GC9 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 AC097637.2-201ENST00000624096 1997 ntBASIC16.15■□□□□ 0.18
VMP1Q96GC9 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VMP1Q96GC9 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VMP1Q96GC9 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VMP1Q96GC9 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VMP1Q96GC9 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VMP1Q96GC9 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VMP1Q96GC9 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 AL590627.1-203ENST00000421194 1026 ntBASIC16.15■□□□□ 0.18
VMP1Q96GC9 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 AC120114.3-201ENST00000611923 658 ntBASIC16.15■□□□□ 0.18
VMP1Q96GC9 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 MIR1199-201ENST00000621445 119 ntBASIC16.15■□□□□ 0.18
VMP1Q96GC9 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VMP1Q96GC9 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VMP1Q96GC9 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VMP1Q96GC9 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
VMP1Q96GC9 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VMP1Q96GC9 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.15■□□□□ 0.18
VMP1Q96GC9 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VMP1Q96GC9 AC008741.2-201ENST00000612792 3115 ntBASIC16.14■□□□□ 0.18
VMP1Q96GC9 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.14■□□□□ 0.18
VMP1Q96GC9 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.14■□□□□ 0.18
VMP1Q96GC9 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 AC243591.1-201ENST00000452967 1364 ntBASIC16.14■□□□□ 0.17
VMP1Q96GC9 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 AC068418.2-201ENST00000577309 3703 ntBASIC16.14■□□□□ 0.17
VMP1Q96GC9 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.14■□□□□ 0.17
VMP1Q96GC9 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms