Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 RN7SL589P-201ENST00000481268 310 ntBASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 AP000344.2-201ENST00000512987 629 ntBASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 KRT8P48-201ENST00000515599 1220 ntBASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 AC243562.1-201ENST00000560672 389 ntBASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 AC022145.2-201ENST00000598203 171 ntBASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 AC106886.4-201ENST00000623557 2502 ntBASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ECHDC3Q96DC8 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 AP001160.2-201ENST00000596071 487 ntBASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ECHDC3Q96DC8 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 AL031731.1-201ENST00000642131 2094 ntBASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 GGT4P-201ENST00000623672 1708 ntBASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 AC004461.1-201ENST00000412461 403 ntBASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms