Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
BRF1Q92994 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.75■□□□□ 0.75
BRF1Q92994 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 AC092364.2-201ENST00000596710 2692 ntBASIC19.75■□□□□ 0.75
BRF1Q92994 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.75■□□□□ 0.75
BRF1Q92994 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.75■□□□□ 0.75
BRF1Q92994 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
BRF1Q92994 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
BRF1Q92994 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.75■□□□□ 0.75
BRF1Q92994 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.75■□□□□ 0.75
BRF1Q92994 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.75■□□□□ 0.75
BRF1Q92994 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.75■□□□□ 0.75
BRF1Q92994 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.75■□□□□ 0.75
BRF1Q92994 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.75■□□□□ 0.75
BRF1Q92994 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.75■□□□□ 0.75
BRF1Q92994 AC005412.3-201ENST00000580309 715 ntBASIC19.75■□□□□ 0.75
BRF1Q92994 CYP2A7P1-201ENST00000595391 815 ntBASIC19.75■□□□□ 0.75
BRF1Q92994 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.75■□□□□ 0.75
BRF1Q92994 ACTL9-202ENST00000612068 1252 ntBASIC19.75■□□□□ 0.75
BRF1Q92994 AC010654.1-201ENST00000615722 808 ntBASIC19.75■□□□□ 0.75
BRF1Q92994 AL512652.2-201ENST00000625156 1716 ntBASIC19.75■□□□□ 0.75
BRF1Q92994 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.75■□□□□ 0.75
BRF1Q92994 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.75■□□□□ 0.75
BRF1Q92994 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.75■□□□□ 0.75
BRF1Q92994 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
BRF1Q92994 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
BRF1Q92994 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.75■□□□□ 0.75
BRF1Q92994 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRF1Q92994 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
BRF1Q92994 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.74■□□□□ 0.75
BRF1Q92994 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
BRF1Q92994 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
BRF1Q92994 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
BRF1Q92994 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19.74■□□□□ 0.75
BRF1Q92994 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.74■□□□□ 0.75
BRF1Q92994 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.74■□□□□ 0.75
BRF1Q92994 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.74■□□□□ 0.75
BRF1Q92994 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
BRF1Q92994 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.74■□□□□ 0.75
BRF1Q92994 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.74■□□□□ 0.75
BRF1Q92994 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.74■□□□□ 0.75
BRF1Q92994 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
BRF1Q92994 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
BRF1Q92994 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
BRF1Q92994 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.74■□□□□ 0.75
BRF1Q92994 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC19.74■□□□□ 0.75
BRF1Q92994 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
BRF1Q92994 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.74■□□□□ 0.75
BRF1Q92994 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.74■□□□□ 0.75
BRF1Q92994 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
BRF1Q92994 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.74■□□□□ 0.75
BRF1Q92994 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
BRF1Q92994 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRF1Q92994 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
BRF1Q92994 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
BRF1Q92994 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
BRF1Q92994 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.73■□□□□ 0.75
BRF1Q92994 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
BRF1Q92994 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
BRF1Q92994 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
BRF1Q92994 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms