Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 AL592071.1-201ENST00000611956 408 ntBASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
DEPDC4Q8N2C3 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
DEPDC4Q8N2C3 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 AC097374.2-201ENST00000618617 1306 ntBASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 MTCL1P1-201ENST00000446207 792 ntBASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 AC074051.2-201ENST00000565115 352 ntBASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
DEPDC4Q8N2C3 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 MINOS1P3-201ENST00000457048 203 ntBASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 ABR-204ENST00000543210 1049 ntTSL 2 BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 MPI-205ENST00000562606 1052 ntTSL 3 BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 AC091304.2-201ENST00000564639 760 ntBASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 ABR-217ENST00000572441 563 ntTSL 4 BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms