Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 AL645728.1-201ENST00000366221 2101 ntBASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 GK-202ENST00000378941 458 ntTSL 3 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 METTL26-204ENST00000397665 558 ntTSL 2 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 AL627223.1-201ENST00000416693 442 ntBASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 IGHV3OR16-6-201ENST00000568775 360 ntBASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 AC015911.4-201ENST00000588022 1070 ntBASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 AC012645.4-201ENST00000610691 1061 ntBASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SH3RF1Q7Z6J0 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 PI4KAP1-204ENST00000612579 1703 ntBASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 TIMM8BP1-201ENST00000452384 211 ntBASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 AC009093.7-201ENST00000623853 1223 ntBASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 UBALD1-205ENST00000590891 2641 ntBASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
SH3RF1Q7Z6J0 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 AC002472.2-201ENST00000442739 958 ntBASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 POLD4-211ENST00000539074 714 ntTSL 3 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 VPS29-207ENST00000549970 818 ntTSL 3 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 RN7SL204P-201ENST00000582831 262 ntBASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms