Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 AC244093.1-201ENST00000610837 814 ntBASIC11.51□□□□□ -0.57
CSMD3Q7Z407 RETN-203ENST00000629642 400 ntTSL 5 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 ABALON-201ENST00000629058 1903 ntBASIC11.51□□□□□ -0.57
CSMD3Q7Z407 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
CSMD3Q7Z407 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 AC007431.3-201ENST00000623221 587 ntBASIC11.5□□□□□ -0.57
CSMD3Q7Z407 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 AC108860.2-201ENST00000562760 2183 ntBASIC11.5□□□□□ -0.57
CSMD3Q7Z407 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 AL353705.2-201ENST00000428243 662 ntBASIC11.5□□□□□ -0.57
CSMD3Q7Z407 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 AC243960.2-201ENST00000600996 747 ntBASIC11.5□□□□□ -0.57
CSMD3Q7Z407 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 AC093525.8-201ENST00000624099 1342 ntBASIC11.5□□□□□ -0.57
CSMD3Q7Z407 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 RHOA-206ENST00000454011 889 ntTSL 2 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 TMEM261P1-201ENST00000604899 340 ntBASIC11.5□□□□□ -0.57
CSMD3Q7Z407 RN7SL828P-201ENST00000607615 303 ntBASIC11.5□□□□□ -0.57
CSMD3Q7Z407 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
CSMD3Q7Z407 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CSMD3Q7Z407 CROCCP2-202ENST00000412962 2773 ntBASIC11.49□□□□□ -0.57
CSMD3Q7Z407 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
CSMD3Q7Z407 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC11.49□□□□□ -0.57
CSMD3Q7Z407 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CSMD3Q7Z407 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CSMD3Q7Z407 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
CSMD3Q7Z407 HLA-H-201ENST00000383620 1096 ntBASIC11.49□□□□□ -0.57
CSMD3Q7Z407 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC11.49□□□□□ -0.57
CSMD3Q7Z407 AL589987.1-201ENST00000453380 819 ntBASIC11.49□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms