Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.24■□□□□ 0.03
SHFQ7M4L6 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHFQ7M4L6 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHFQ7M4L6 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHFQ7M4L6 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHFQ7M4L6 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
SHFQ7M4L6 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHFQ7M4L6 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHFQ7M4L6 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
SHFQ7M4L6 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHFQ7M4L6 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHFQ7M4L6 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHFQ7M4L6 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHFQ7M4L6 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHFQ7M4L6 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
SHFQ7M4L6 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHFQ7M4L6 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
SHFQ7M4L6 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.24■□□□□ 0.03
SHFQ7M4L6 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SHFQ7M4L6 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHFQ7M4L6 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 AL031133.1-201ENST00000406807 723 ntBASIC15.23■□□□□ 0.03
SHFQ7M4L6 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 COX5A-202ENST00000562233 441 ntTSL 3 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 COX5A-204ENST00000567270 579 ntTSL 3 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 AC073592.5-201ENST00000624854 528 ntBASIC15.23■□□□□ 0.03
SHFQ7M4L6 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 AL365203.3-201ENST00000609742 2057 ntBASIC15.23■□□□□ 0.03
SHFQ7M4L6 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHFQ7M4L6 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 AC016734.2-201ENST00000624325 1377 ntBASIC15.23■□□□□ 0.03
SHFQ7M4L6 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.23■□□□□ 0.03
SHFQ7M4L6 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHFQ7M4L6 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC15.22■□□□□ 0.03
SHFQ7M4L6 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.22■□□□□ 0.03
SHFQ7M4L6 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHFQ7M4L6 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHFQ7M4L6 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
SHFQ7M4L6 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.22■□□□□ 0.03
SHFQ7M4L6 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.22■□□□□ 0.03
SHFQ7M4L6 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHFQ7M4L6 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.22■□□□□ 0.03
SHFQ7M4L6 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.22■□□□□ 0.03
SHFQ7M4L6 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHFQ7M4L6 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHFQ7M4L6 TUBB8P12-201ENST00000308911 1335 ntBASIC15.22■□□□□ 0.03
SHFQ7M4L6 TUBB7P-202ENST00000428444 1305 ntBASIC15.22■□□□□ 0.03
SHFQ7M4L6 TUBB8P7-204ENST00000567960 1332 ntBASIC15.22■□□□□ 0.03
SHFQ7M4L6 AC005332.1-201ENST00000577698 1310 ntBASIC15.22■□□□□ 0.03
SHFQ7M4L6 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHFQ7M4L6 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHFQ7M4L6 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHFQ7M4L6 TP73-AS1-210ENST00000637775 1455 ntBASIC15.22■□□□□ 0.03
SHFQ7M4L6 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.22■□□□□ 0.03
SHFQ7M4L6 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHFQ7M4L6 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHFQ7M4L6 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms