Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 SATB1-217ENST00000493952 626 ntTSL 3 BASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 SERBP1P5-201ENST00000510079 1181 ntBASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 AC013467.2-201ENST00000605472 835 ntBASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 AC008761.3-201ENST00000624803 892 ntBASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 TUBB8P12-201ENST00000308911 1335 ntBASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 TUBB7P-202ENST00000428444 1305 ntBASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 TUBB8P7-204ENST00000567960 1332 ntBASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 GOLGA2P9-201ENST00000596977 1937 ntBASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHROOM1Q2M3G4 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 AC027369.6-201ENST00000525520 931 ntBASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 AL590560.3-201ENST00000623350 461 ntBASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 AL512652.2-201ENST00000625156 1716 ntBASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
SHROOM1Q2M3G4 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 AC073592.8-201ENST00000624126 511 ntBASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHROOM1Q2M3G4 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 AL391256.1-201ENST00000443260 1855 ntBASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 WBP2-203ENST00000433525 928 ntTSL 2 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 TERF1P3-201ENST00000505638 1227 ntBASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 PRR29-209ENST00000582540 967 ntTSL 2 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 KRT8P39-201ENST00000396270 1433 ntBASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms