Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC19.34■□□□□ 0.69
CTCFP49711 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC19.34■□□□□ 0.69
CTCFP49711 AL021578.1-201ENST00000613646 709 ntBASIC19.34■□□□□ 0.69
CTCFP49711 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.34■□□□□ 0.69
CTCFP49711 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.34■□□□□ 0.69
CTCFP49711 AC018470.1-201ENST00000624790 3129 ntBASIC19.34■□□□□ 0.69
CTCFP49711 AC138932.1-201ENST00000534164 6830 ntBASIC19.34■□□□□ 0.69
CTCFP49711 PDIA3P1-201ENST00000471856 1510 ntBASIC19.34■□□□□ 0.69
CTCFP49711 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
CTCFP49711 NARF-206ENST00000457415 1668 ntTSL 5 BASIC19.33■□□□□ 0.69
CTCFP49711 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
CTCFP49711 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CTCFP49711 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CTCFP49711 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
CTCFP49711 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CTCFP49711 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CTCFP49711 AC126763.1-201ENST00000552015 2118 ntBASIC19.33■□□□□ 0.69
CTCFP49711 PCDHB18P-201ENST00000524813 2368 ntBASIC19.33■□□□□ 0.69
CTCFP49711 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CTCFP49711 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CTCFP49711 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CTCFP49711 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
CTCFP49711 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.33■□□□□ 0.68
CTCFP49711 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
CTCFP49711 RN7SL618P-201ENST00000477850 296 ntBASIC19.33■□□□□ 0.68
CTCFP49711 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC19.33■□□□□ 0.68
CTCFP49711 TPRX2P-201ENST00000535362 881 ntBASIC19.33■□□□□ 0.68
CTCFP49711 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
CTCFP49711 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
CTCFP49711 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC19.33■□□□□ 0.68
CTCFP49711 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC19.33■□□□□ 0.68
CTCFP49711 AL118558.3-201ENST00000607414 1079 ntBASIC19.33■□□□□ 0.68
CTCFP49711 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC19.33■□□□□ 0.68
CTCFP49711 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
CTCFP49711 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
CTCFP49711 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CTCFP49711 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CTCFP49711 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CTCFP49711 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC19.33■□□□□ 0.68
CTCFP49711 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.33■□□□□ 0.68
CTCFP49711 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CTCFP49711 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CTCFP49711 ESPNP-201ENST00000270691 2015 ntBASIC19.32■□□□□ 0.68
CTCFP49711 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.32■□□□□ 0.68
CTCFP49711 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.32■□□□□ 0.68
CTCFP49711 AL133373.2-201ENST00000623187 2828 ntBASIC19.32■□□□□ 0.68
CTCFP49711 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.32■□□□□ 0.68
CTCFP49711 RPS19-201ENST00000221975 500 ntTSL 3 BASIC19.32■□□□□ 0.68
CTCFP49711 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTCFP49711 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
CTCFP49711 AGER-203ENST00000375065 665 ntTSL 2 BASIC19.32■□□□□ 0.68
CTCFP49711 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC19.32■□□□□ 0.68
CTCFP49711 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CTCFP49711 CSF2RBP1-201ENST00000447905 391 ntBASIC19.32■□□□□ 0.68
CTCFP49711 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CTCFP49711 AC007551.1-201ENST00000457394 519 ntBASIC19.32■□□□□ 0.68
CTCFP49711 SPDYE18-201ENST00000510091 1050 ntBASIC19.32■□□□□ 0.68
CTCFP49711 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC19.32■□□□□ 0.68
CTCFP49711 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC19.32■□□□□ 0.68
CTCFP49711 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC19.32■□□□□ 0.68
CTCFP49711 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC19.32■□□□□ 0.68
CTCFP49711 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
CTCFP49711 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC19.32■□□□□ 0.68
CTCFP49711 AL031055.1-201ENST00000606362 631 ntBASIC19.32■□□□□ 0.68
CTCFP49711 WFDC1-204ENST00000613603 549 ntBASIC19.32■□□□□ 0.68
CTCFP49711 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC19.32■□□□□ 0.68
CTCFP49711 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTCFP49711 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTCFP49711 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTCFP49711 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTCFP49711 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTCFP49711 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CTCFP49711 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTCFP49711 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTCFP49711 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC19.32■□□□□ 0.68
CTCFP49711 AC018665.1-201ENST00000622927 1362 ntBASIC19.32■□□□□ 0.68
CTCFP49711 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
CTCFP49711 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CTCFP49711 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CTCFP49711 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTCFP49711 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTCFP49711 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTCFP49711 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTCFP49711 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTCFP49711 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTCFP49711 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC19.31■□□□□ 0.68
CTCFP49711 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.31■□□□□ 0.68
CTCFP49711 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTCFP49711 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.31■□□□□ 0.68
CTCFP49711 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTCFP49711 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTCFP49711 LBX2-201ENST00000341396 886 ntTSL 3 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms