Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CDX1P47902 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC13.79□□□□□ -0.2
CDX1P47902 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC13.79□□□□□ -0.2
CDX1P47902 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC13.79□□□□□ -0.2
CDX1P47902 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC13.79□□□□□ -0.2
CDX1P47902 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
CDX1P47902 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
CDX1P47902 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CDX1P47902 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
CDX1P47902 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC13.79□□□□□ -0.2
CDX1P47902 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC13.79□□□□□ -0.2
CDX1P47902 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC13.79□□□□□ -0.2
CDX1P47902 AC126177.1-201ENST00000547829 2218 ntBASIC13.79□□□□□ -0.2
CDX1P47902 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
CDX1P47902 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
CDX1P47902 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 AC063926.3-201ENST00000624734 5658 ntBASIC13.79□□□□□ -0.2
CDX1P47902 AKR1C7P-201ENST00000305623 895 ntBASIC13.79□□□□□ -0.2
CDX1P47902 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC13.79□□□□□ -0.2
CDX1P47902 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC13.79□□□□□ -0.2
CDX1P47902 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC13.79□□□□□ -0.2
CDX1P47902 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 KLK8-205ENST00000593490 267 ntTSL 3 BASIC13.79□□□□□ -0.2
CDX1P47902 AC064862.7-201ENST00000604520 867 ntBASIC13.79□□□□□ -0.2
CDX1P47902 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 AC144831.1-201ENST00000573312 2656 ntBASIC13.79□□□□□ -0.2
CDX1P47902 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 STK4-201ENST00000372801 2038 ntTSL 2 BASIC13.79□□□□□ -0.2
CDX1P47902 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC13.79□□□□□ -0.2
CDX1P47902 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC13.79□□□□□ -0.2
CDX1P47902 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC13.79□□□□□ -0.2
CDX1P47902 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC13.79□□□□□ -0.2
CDX1P47902 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC13.79□□□□□ -0.2
CDX1P47902 KRT8P10-201ENST00000450021 1447 ntBASIC13.79□□□□□ -0.2
CDX1P47902 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC13.79□□□□□ -0.2
CDX1P47902 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC13.79□□□□□ -0.2
CDX1P47902 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC13.79□□□□□ -0.2
CDX1P47902 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CDX1P47902 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC13.78□□□□□ -0.2
CDX1P47902 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
CDX1P47902 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CDX1P47902 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CDX1P47902 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC13.78□□□□□ -0.2
CDX1P47902 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
CDX1P47902 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.78□□□□□ -0.2
CDX1P47902 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC13.78□□□□□ -0.2
CDX1P47902 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC13.78□□□□□ -0.2
CDX1P47902 AC007967.3-201ENST00000434308 558 ntBASIC13.78□□□□□ -0.2
CDX1P47902 SRP19-202ENST00000445150 833 ntTSL 2 BASIC13.78□□□□□ -0.2
CDX1P47902 AC079781.3-201ENST00000449110 356 ntBASIC13.78□□□□□ -0.2
CDX1P47902 FDX1P1-201ENST00000449115 551 ntBASIC13.78□□□□□ -0.2
CDX1P47902 AF238378.1-201ENST00000526806 358 ntBASIC13.78□□□□□ -0.2
CDX1P47902 AL662844.1-201ENST00000546340 181 ntBASIC13.78□□□□□ -0.2
CDX1P47902 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC13.78□□□□□ -0.2
CDX1P47902 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
CDX1P47902 CALM3-211ENST00000598871 561 ntTSL 4 BASIC13.78□□□□□ -0.2
CDX1P47902 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC13.78□□□□□ -0.2
CDX1P47902 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC13.78□□□□□ -0.2
CDX1P47902 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC13.78□□□□□ -0.2
CDX1P47902 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC13.78□□□□□ -0.2
CDX1P47902 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC13.78□□□□□ -0.2
CDX1P47902 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
CDX1P47902 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC13.78□□□□□ -0.2
CDX1P47902 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.78□□□□□ -0.2
CDX1P47902 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CDX1P47902 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC13.78□□□□□ -0.2
CDX1P47902 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
CDX1P47902 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC13.77□□□□□ -0.2
CDX1P47902 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms