Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SHMT2P34897 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.46■□□□□ 0.23
SHMT2P34897 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHMT2P34897 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHMT2P34897 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHMT2P34897 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SHMT2P34897 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SHMT2P34897 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SHMT2P34897 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.46■□□□□ 0.23
SHMT2P34897 OR6D1P-203ENST00000641209 4860 ntBASIC16.46■□□□□ 0.23
SHMT2P34897 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHMT2P34897 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.46■□□□□ 0.23
SHMT2P34897 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
SHMT2P34897 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHMT2P34897 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.46■□□□□ 0.23
SHMT2P34897 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
SHMT2P34897 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHMT2P34897 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.46■□□□□ 0.23
SHMT2P34897 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.46■□□□□ 0.23
SHMT2P34897 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.46■□□□□ 0.23
SHMT2P34897 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.46■□□□□ 0.23
SHMT2P34897 AC096734.2-201ENST00000562054 433 ntBASIC16.46■□□□□ 0.23
SHMT2P34897 AC040169.1-201ENST00000565382 521 ntBASIC16.46■□□□□ 0.23
SHMT2P34897 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.46■□□□□ 0.23
SHMT2P34897 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.46■□□□□ 0.23
SHMT2P34897 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
SHMT2P34897 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHMT2P34897 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.46■□□□□ 0.23
SHMT2P34897 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.46■□□□□ 0.23
SHMT2P34897 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.46■□□□□ 0.23
SHMT2P34897 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
SHMT2P34897 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SHMT2P34897 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.46■□□□□ 0.22
SHMT2P34897 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
SHMT2P34897 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
SHMT2P34897 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.46■□□□□ 0.22
SHMT2P34897 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.46■□□□□ 0.22
SHMT2P34897 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.45■□□□□ 0.22
SHMT2P34897 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.45■□□□□ 0.22
SHMT2P34897 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.45■□□□□ 0.22
SHMT2P34897 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SHMT2P34897 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.45■□□□□ 0.22
SHMT2P34897 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 PCDHA1-201ENST00000378133 2726 ntBASIC16.45■□□□□ 0.22
SHMT2P34897 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SHMT2P34897 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.45■□□□□ 0.22
SHMT2P34897 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.45■□□□□ 0.22
SHMT2P34897 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 FAM185BP-201ENST00000443595 716 ntBASIC16.45■□□□□ 0.22
SHMT2P34897 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.45■□□□□ 0.22
SHMT2P34897 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.45■□□□□ 0.22
SHMT2P34897 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.45■□□□□ 0.22
SHMT2P34897 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.45■□□□□ 0.22
SHMT2P34897 AC010507.1-201ENST00000633895 436 ntBASIC16.45■□□□□ 0.22
SHMT2P34897 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.45■□□□□ 0.22
SHMT2P34897 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
SHMT2P34897 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.45■□□□□ 0.22
SHMT2P34897 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.45■□□□□ 0.22
SHMT2P34897 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SHMT2P34897 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.45■□□□□ 0.22
SHMT2P34897 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.45■□□□□ 0.22
SHMT2P34897 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHMT2P34897 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
SHMT2P34897 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.44■□□□□ 0.22
SHMT2P34897 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.44■□□□□ 0.22
SHMT2P34897 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.44■□□□□ 0.22
SHMT2P34897 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.44■□□□□ 0.22
SHMT2P34897 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.44■□□□□ 0.22
SHMT2P34897 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.44■□□□□ 0.22
SHMT2P34897 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms