Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.11■□□□□ 0.33
VCANP13611 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCANP13611 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
VCANP13611 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.11■□□□□ 0.33
VCANP13611 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.11■□□□□ 0.33
VCANP13611 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VCANP13611 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCANP13611 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VCANP13611 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
VCANP13611 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VCANP13611 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
VCANP13611 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.11■□□□□ 0.33
VCANP13611 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
VCANP13611 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VCANP13611 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCANP13611 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCANP13611 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCANP13611 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VCANP13611 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC17.11■□□□□ 0.33
VCANP13611 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.11■□□□□ 0.33
VCANP13611 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.11■□□□□ 0.33
VCANP13611 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCANP13611 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VCANP13611 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
VCANP13611 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCANP13611 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VCANP13611 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCANP13611 HLA-H-201ENST00000383620 1096 ntBASIC17.11■□□□□ 0.33
VCANP13611 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCANP13611 RRP7BP-205ENST00000566851 833 ntBASIC17.11■□□□□ 0.33
VCANP13611 AC092337.1-201ENST00000568699 1129 ntBASIC17.11■□□□□ 0.33
VCANP13611 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.11■□□□□ 0.33
VCANP13611 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC17.11■□□□□ 0.33
VCANP13611 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.11■□□□□ 0.33
VCANP13611 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
VCANP13611 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.1■□□□□ 0.33
VCANP13611 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.1■□□□□ 0.33
VCANP13611 RPS3-201ENST00000278572 907 ntTSL 3 BASIC17.1■□□□□ 0.33
VCANP13611 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
VCANP13611 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.1■□□□□ 0.33
VCANP13611 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.1■□□□□ 0.33
VCANP13611 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCANP13611 IMP3P2-201ENST00000489760 475 ntBASIC17.1■□□□□ 0.33
VCANP13611 CFL1-214ENST00000534769 758 ntTSL 2 BASIC17.1■□□□□ 0.33
VCANP13611 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
VCANP13611 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC17.1■□□□□ 0.33
VCANP13611 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCANP13611 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCANP13611 EGFEM1P-202ENST00000431685 1563 ntBASIC17.1■□□□□ 0.33
VCANP13611 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.1■□□□□ 0.33
VCANP13611 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VCANP13611 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VCANP13611 MIR326-201ENST00000362220 95 ntBASIC17.1■□□□□ 0.33
VCANP13611 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VCANP13611 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC17.1■□□□□ 0.33
VCANP13611 AC008267.1-201ENST00000474858 1069 ntBASIC17.1■□□□□ 0.33
VCANP13611 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC17.1■□□□□ 0.33
VCANP13611 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC17.1■□□□□ 0.33
VCANP13611 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCANP13611 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.1■□□□□ 0.33
VCANP13611 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCANP13611 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCANP13611 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCANP13611 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VCANP13611 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC17.09■□□□□ 0.33
VCANP13611 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
VCANP13611 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC17.09■□□□□ 0.33
VCANP13611 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.09■□□□□ 0.33
VCANP13611 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC17.09■□□□□ 0.33
VCANP13611 AC005412.3-201ENST00000580309 715 ntBASIC17.09■□□□□ 0.33
VCANP13611 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VCANP13611 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.09■□□□□ 0.33
VCANP13611 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCANP13611 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.09■□□□□ 0.33
VCANP13611 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
VCANP13611 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCANP13611 CROCCP3-202ENST00000420820 1947 ntBASIC17.09■□□□□ 0.33
VCANP13611 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
VCANP13611 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VCANP13611 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.09■□□□□ 0.33
VCANP13611 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCANP13611 PTPA-217ENST00000434095 870 ntTSL 2 BASIC17.09■□□□□ 0.33
VCANP13611 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC17.09■□□□□ 0.33
VCANP13611 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
VCANP13611 AL022328.3-201ENST00000607943 679 ntBASIC17.09■□□□□ 0.33
VCANP13611 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.09■□□□□ 0.33
VCANP13611 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.09■□□□□ 0.33
VCANP13611 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
VCANP13611 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCANP13611 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.09■□□□□ 0.33
VCANP13611 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCANP13611 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCANP13611 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCANP13611 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCANP13611 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCANP13611 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCANP13611 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VCANP13611 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC17.09■□□□□ 0.33
VCANP13611 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC17.09■□□□□ 0.33
VCANP13611 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms