Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC4P09017 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXC4P09017 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC4P09017 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC4P09017 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.27■□□□□ 0.2
HOXC4P09017 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC4P09017 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
HOXC4P09017 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.27■□□□□ 0.2
HOXC4P09017 HLA-H-201ENST00000383620 1096 ntBASIC16.27■□□□□ 0.2
HOXC4P09017 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
HOXC4P09017 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.27■□□□□ 0.2
HOXC4P09017 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.27■□□□□ 0.2
HOXC4P09017 AC140878.1-201ENST00000565277 250 ntBASIC16.27■□□□□ 0.2
HOXC4P09017 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXC4P09017 AC018529.1-201ENST00000613063 361 ntBASIC16.27■□□□□ 0.2
HOXC4P09017 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.27■□□□□ 0.2
HOXC4P09017 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC4P09017 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
HOXC4P09017 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.27■□□□□ 0.2
HOXC4P09017 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HOXC4P09017 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.27■□□□□ 0.19
HOXC4P09017 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HOXC4P09017 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
HOXC4P09017 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
HOXC4P09017 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HOXC4P09017 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HOXC4P09017 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HOXC4P09017 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
HOXC4P09017 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
HOXC4P09017 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
HOXC4P09017 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.27■□□□□ 0.19
HOXC4P09017 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
HOXC4P09017 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.26■□□□□ 0.19
HOXC4P09017 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
HOXC4P09017 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
HOXC4P09017 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.26■□□□□ 0.19
HOXC4P09017 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
HOXC4P09017 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
HOXC4P09017 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.26■□□□□ 0.19
HOXC4P09017 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
HOXC4P09017 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.26■□□□□ 0.19
HOXC4P09017 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.26■□□□□ 0.19
HOXC4P09017 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.26■□□□□ 0.19
HOXC4P09017 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.26■□□□□ 0.19
HOXC4P09017 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.26■□□□□ 0.19
HOXC4P09017 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.26■□□□□ 0.19
HOXC4P09017 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.26■□□□□ 0.19
HOXC4P09017 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.26■□□□□ 0.19
HOXC4P09017 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
HOXC4P09017 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.26■□□□□ 0.19
HOXC4P09017 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC4P09017 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.25■□□□□ 0.19
HOXC4P09017 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 AL031731.1-201ENST00000642131 2094 ntBASIC16.25■□□□□ 0.19
HOXC4P09017 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
HOXC4P09017 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
HOXC4P09017 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
HOXC4P09017 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 AC107890.1-201ENST00000422478 521 ntBASIC16.25■□□□□ 0.19
HOXC4P09017 AC093724.1-201ENST00000448659 1027 ntBASIC16.25■□□□□ 0.19
HOXC4P09017 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.25■□□□□ 0.19
HOXC4P09017 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.25■□□□□ 0.19
HOXC4P09017 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.25■□□□□ 0.19
HOXC4P09017 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.25■□□□□ 0.19
HOXC4P09017 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
HOXC4P09017 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HOXC4P09017 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms